PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn389001
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 487aa    MW: 53507.3 Da    PI: 6.195
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn389001genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.47.9e-16271317455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  Achn389001 271 VHNLSERRRRDRINEKMRALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 317
                 6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.02E-20265333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.044267316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.14E-16270321No hitNo description
Gene3DG3DSA:4.10.280.106.5E-21271328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-13271317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-17273322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MNHCVPDFEM DEDYAIPTSS GLSRQKKSPM PEEEIMELLW QNGQVVMQSQ NQRSLRRSQI  60
GDAVLPLEQS ASRQIRPEEE SATQLFMQED EMASWLHCTI DDSSFERDLY ADLIYPAPCA  120
PAAPIPDVRA PEVRIPPPNA AASRPPIPPA RNFLHFSRPK GKMEPGPSRI CAMSGGGGAA  180
AVTSSAAGGG GREAGACELT VTSSPGGSGA SVSANAEAVY KPMATEGRKR KGVETDDTEC  240
QSEQDVEFES PDAKKQVRGS TSTKRSRAAE VHNLSERRRR DRINEKMRAL QELIPRCNKS  300
DKASMLDEAI EYLKSLQLQV QMMSMGCSMV PMMFPGVQQF MPQMGIGMGM GMGMEMGMNR  360
PMMPFPSVLA GSALQTQAAA AHMGPPFPMQ AFHMPPVPLP DPSRSQATGQ SDLMLFSMGT  420
QNPNQPRMPN FADPYQQYLG LHQMQLPLPQ VYLFMLELHN MKFPYMVSFM LYGVRTHPHM  480
LVAYPG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275280ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028065178.10.0transcription factor PIF1-like isoform X2
TrEMBLA0A2R6QSH40.0A0A2R6QSH4_ACTCH; Transcription factor like
STRINGXP_010109673.11e-162(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40592341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.24e-34phytochrome interacting factor 3