PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn389161
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family M-type_MADS
Protein Properties Length: 200aa    MW: 22158.1 Da    PI: 8.0545
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn389161genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF72.63.2e-231161151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krie+ + rqv +skR+ gi KKA+ELS+LCd++v +i+fs+tg+l  ++s
  Achn389161 11 KRIESPTTRQVIYSKRKDGIVKKANELSILCDTDVGLIMFSPTGRLTSFAS 61
                79*********************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.3E-30362IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.198363IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.54E-25477IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-21525IPR002100Transcription factor, MADS-box
PfamPF003196.5E-221259IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-212540IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-214061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MSMGRNKLLV KRIESPTTRQ VIYSKRKDGI VKKANELSIL CDTDVGLIMF SPTGRLTSFA  60
SNGRVEDIFL RFINRPDELK GGYYNPNVEK IGSLFEAGVH QQFLENAIQH IGQSKAKLVG  120
SRIVQQPNDD VEAAPFCVAN DDSYRDESEN PDIRRDPSSV EQYGEEICSM GPHLSLNFLK  180
AQKNWNLSGG GQAPKLGIK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020549788.17e-67agamous-like MADS-box protein AGL104
TrEMBLA0A2R6QWC91e-140A0A2R6QWC9_ACTCH; Agamous-like MADS-box protein
STRINGMigut.H01211.1.p4e-53(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52921836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.12e-28AGAMOUS-like 104