PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn390011
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family TALE
Protein Properties Length: 144aa    MW: 16735.9 Da    PI: 7.0936
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn390011genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.62.3e-09891232155
                 HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
    Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                 k +yp+++++  LA+++gL+++q+ +WF N+R ++
  Achn390011  89 KWPYPTEADKIFLAESTGLDQKQINNWFINQRKRH 123
                 569*****************************885 PP
2ELK37.35.7e-134263122
         ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                ELK+ LlrKY+g++gsLk EFs
  Achn390011 42 ELKDTLLRKYGGHIGSLKLEFS 63
                9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011886.4E-74263IPR005539ELK domain
PfamPF037896.1E-104263IPR005539ELK domain
PROSITE profilePS5121310.4584262IPR005539ELK domain
PROSITE profilePS5007112.8663126IPR001356Homeobox domain
SuperFamilySSF466892.18E-2064138IPR009057Homeodomain-like
SMARTSM003893.2E-1265130IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-2868128IPR009057Homeodomain-like
CDDcd000861.94E-1175127No hitNo description
PfamPF059203.9E-1883122IPR008422Homeobox KN domain
PROSITE patternPS000270101124IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MNFNTVSELI LIIADEVAVS SDEEFSGAME VPEARTRSEE QELKDTLLRK YGGHIGSLKL  60
EFSKKKKKKG KLPKDARETL FEWWSSHYKW PYPTEADKIF LAESTGLDQK QINNWFINQR  120
KRHWKPSANM MENLSGHFFT DDH*
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018805223.12e-56PREDICTED: homeobox protein knotted-1-like 6
RefseqXP_018805224.12e-56PREDICTED: homeobox protein knotted-1-like 6
SwissprotQ84JS63e-49KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A2R6QR563e-76A0A2R6QR56_ACTCH; Homeobox protein knotted-1-like
STRINGVIT_01s0127g00210.t018e-56(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7532480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.21e-43KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]