PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn391061

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

FAR1

Protein Properties

Length: 120aa MW: 13503.9 Da PI: 4.8539

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn391061	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	28.9	3.7e-09	42	104	1	48
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk..............t 48 k+Y++Y+++ GF +r+++s+k +r++ +t+ fvC kegk ++ +k Achn391061 42 KYYEDYGRQNGFWIRTRTSSKGqNRSNDVTSVLFVCAKEGKYVPKAEKdgvegnderveddkV 104 69**********99888776477888***********9999988788887776555442 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.3E-7	42	112	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 120 aa Download sequence Send to blast
MEESFGLDDF EMEDLQTPND NVKRLEAPSN GMSFGTIEEA QKYYEDYGRQ NGFWIRTRTS 60 SKGQNRSNDV TSVLFVCAKE GKYVPKAEKD GVEGNDERVE DDKVLSKRRK KSCSTAKCG*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008219733.2	3e-29	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2R6R5G6	2e-47	A0A2R6R5G6_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRING	EMJ10165	2e-27	(Prunus persica)
STRING	XP_004289266.1	2e-27	(Fragaria vesca)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	4e-07	FAR1-related sequence 10