PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco000007.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family E2F/DP
Protein Properties Length: 249aa    MW: 28276.2 Da    PI: 6.9295
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco000007.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP71.11.3e-2240117471
      E2F_TDP   4 ksLrlltqkflklleksee.givtlnevakeLvse.............dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                  ++Lr +++    +++k+e+ g++t+neva+++++e             d+kn+rRR+YD++NVL+a+++i k +k+e++w g
  Aco000007.1  40 WGLRRFSKI---VCRKVEAkGRTTYNEVADDIMAElrsavnngelvgfDEKNIRRRVYDAFNVLMAIDVIVK-DKKEVKWTG 117
                  79*******...******99****************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094041.9E-865247IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.101.3E-3334120IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.0E-2137117IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467857.07E-1640118IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023192.4E-1841117IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd144581.06E-28122224IPR014889Transcription factor DP, C-terminal
SMARTSM011386.6E-29124235IPR014889Transcription factor DP, C-terminal
PfamPF087811.1E-28126238IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.07E-31126239No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MTPGTDNVLN LNDLYIQEDD EGQVSDCCAV KKKASRIVGW GLRRFSKIVC RKVEAKGRTT  60
YNEVADDIMA ELRSAVNNGE LVGFDEKNIR RRVYDAFNVL MAIDVIVKDK KEVKWTGFRS  120
GRSEQLNKLE EVRLELLSRI GKKTNFLKEL ENQFVDLQNL MLQNQIRQKS HNSSEGVNLP  180
FLLVKTSPKA TVEIQISENL QLVHFDFNGT PFTLHDDASI LKAMRLRTEA ERIDHTIESS  240
LDCSNTSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-2439118989PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020106334.10.0transcription factor-like protein DPB isoform X1
RefseqXP_020106335.10.0transcription factor-like protein DPB isoform X1
RefseqXP_020106336.10.0transcription factor-like protein DPB isoform X1
SwissprotQ9FNY23e-70DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A2H3Y4232e-97A0A2H3Y423_PHODC; transcription factor-like protein DPB isoform X2
STRINGXP_008793105.11e-97(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.15e-64Transcription factor DP