PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco000307.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

NAC

Protein Properties

Length: 321aa MW: 35662.4 Da PI: 5.4139

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco000307.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	163.8	6.2e-51	13	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 lppGfrFhPtd+el+ +yL++kv++ +++++++++vdiyk++Pw+Lp k+ +e ew fFs+rd+ky++g r+nra++sgyWkatg+dk++l++ ++ Aco000307.1 13 LPPGFRFHPTDQELIIYYLREKVASAVTPATSIVADVDIYKFNPWELPDKAIFGEGEWLFFSPRDRKYPNGARPNRAAASGYWKATGTDKPILATgGS 110 79**************************999***********76667889**********************************9566 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 + g+kk Lvfykgr+pkg+ktdWvmheyrl Aco000307.1 111 QCLGVKKALVFYKGRSPKGVKTDWVMHEYRL 141 679************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.75E-59	7	173	IPR003441	NAC domain
PROSITE profile	PS51005	59.495	13	173	IPR003441	NAC domain
Pfam	PF02365	6.0E-26	14	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
FNMDGIGFPG FRLPPGFRFH PTDQELIIYY LREKVASAVT PATSIVADVD IYKFNPWELP 60 DKAIFGEGEW LFFSPRDRKY PNGARPNRAA ASGYWKATGT DKPILATGGS QCLGVKKALV 120 FYKGRSPKGV KTDWVMHEYR LLDAAAISSS FSHAKPKDTM RLDDWVLCRV RQKGPFPPET 180 DQENIQSFNI PQPPVLNNEH IGGEMVMEER NIGLSEWSDY QVLSYFIDSQ QEAEIASCSL 240 GMATNNNNNV NLEPHQLPLI SSVLDSVKKT LSFGALDELM LRLPPSYQPL NSSSSICEQP 300 SSPSASGSIS VDQVFPQFMM *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-64	13	173	15	168	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene coding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1. {ECO:0000269\|PubMed:17124321, ECO:0000269\|PubMed:22278768}.
UniProt	Transcription factor of the NAC family associated with the grain protein content (GPC). Sequences of the 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269\|PubMed:20005003}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020099751.1	0.0	NAC transcription factor 56-like
Swissprot	A0SPJ6	2e-74	NAMB2_TRITD; NAC transcription factor NAM-B2
Swissprot	D2SMN4	2e-74	NAMB1_HORVS; NAC transcription factor NAM-B1
TrEMBL	A0A199VU68	0.0	A0A199VU68_ANACO; NAC transcription factor NAM-B2
STRING	XP_008782049.1	1e-123	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13797	19	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	4e-69	NAC domain containing protein 2

Link Out ? help Back to Top
Phytozome	Aco000307.1

Publications ? help Back to Top
Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat. Science, 2006. 314(5803): p. 1298-301 [PMID:17124321] Jamar C, et al. NAM-1gene polymorphism and grain protein content in Hordeum. J. Plant Physiol., 2010. 167(6): p. 497-501 [PMID:20005003]