PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco000358.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family WRKY
Protein Properties Length: 366aa    MW: 40118.2 Da    PI: 5.9902
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco000358.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.23.9e-29144203258
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                  dDgy+WrKYGqK++ g++fpr+YYrCt++   gC ++k+v+rs+edp+v++itY+g H++
  Aco000358.1 144 DDGYSWRKYGQKDILGAKFPRGYYRCTHRnsyGCLATKQVQRSDEDPSVFDITYRGGHTC 203
                  8***************************99999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.8E-27141204IPR003657WRKY domain
SuperFamilySSF1182905.49E-25142203IPR003657WRKY domain
SMARTSM007748.0E-41143205IPR003657WRKY domain
PROSITE profilePS5081122.619144201IPR003657WRKY domain
PfamPF031062.9E-27144203IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MKNESVCDVK TLLNVLSQGE EQTLRLEACV GDPDSAEMCR HLARQTHSLF QQAAAMARLI  60
ADSRQQPSSN NNNNNTNTAA VASDSPPRSG SGSPTSESSE RASKEQERRE MSKKRKTLPR  120
WTNQVRVTSG GSSDGGGVIE GTPDDGYSWR KYGQKDILGA KFPRGYYRCT HRNSYGCLAT  180
KQVQRSDEDP SVFDITYRGG HTCLQRRRPT ATAASAAQEP GMLQMQDNRQ LDPNRPQEPH  240
CDQNELLLSF RQGLKVKTEG LIPDGEHGLT SSSFSFPSTP VSNFASTFSP TFISPTTSES  300
NYFSMSPCQM SNFGRGPTFL GSESELTDLI SGATSVANSP MVDIDFVLEP ANFEPSFPSF  360
DSSNFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-191452101880Disease resistance protein RRS1
5w3x_D5e-191452101880Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020100496.10.0probable WRKY transcription factor 41
TrEMBLA0A199VM160.0A0A199VM16_ANACO; Putative WRKY transcription factor 41
STRINGXP_008783826.11e-116(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133402730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.11e-37WRKY family protein