PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco000386.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

G2-like

Protein Properties

Length: 439aa MW: 49577.6 Da PI: 10.226

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco000386.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.9	3.4e-31	38	91	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+a+e+LGG+e+AtPk +l++m+v gL+++hvkSHLQ+YR+ Aco000386.1 38 PRLRWTPDLHLSFVHAIERLGGQERATPKLVLQMMNVRGLSIAHVKSHLQMYRS 91 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.812	34	94	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.5E-29	34	92	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.84E-14	36	92	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.1E-22	38	93	IPR006447	Myb domain, plants
Pfam	PF00249	1.8E-8	39	90	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence Send to blast
MDSGRSPSRK RQSPELNLNE EVADRSPSVR QYNRSKMPRL RWTPDLHLSF VHAIERLGGQ 60 ERATPKLVLQ MMNVRGLSIA HVKSHLQMYR SKKLDNSGQE KMSAITPVVN PMDFHRRMGG 120 GNLQEMLYQR TISLPSQSLR FEKGGFFPSR NAHETNRLYG LLQPPQPQQP FNFKSSLFRQ 180 QEWAFNQQVK MGLIKDQGPA KGLIHEMIFK KDGKPSSSHL FDVRDAITRS NQRMDGRSFG 240 SFDWAGSSSR KLSEALQQTH SFSSSNYYCY SHNNTNNSNN NNNNNVKSNF LDPVVINVRY 300 DHQHEDLSRL ELHKSSEDER RVRGNNCKTK EQKTGLVEKD GMPNLQLSLS TSPMFVDKDE 360 DNEKKRIEAA EEQEVEVKVD SSLSLSLSPP SSMKGTAKSS NLKLVESGSS SSSRSSNNNK 420 AALGLSTLDL TMSIRALE*

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence Send to blast

MDSGRSPSRK RQSPELNLNE EVADRSPSVR QYNRSKMPRL RWTPDLHLSF VHAIERLGGQ  60
ERATPKLVLQ MMNVRGLSIA HVKSHLQMYR SKKLDNSGQE KMSAITPVVN PMDFHRRMGG  120
GNLQEMLYQR TISLPSQSLR FEKGGFFPSR NAHETNRLYG LLQPPQPQQP FNFKSSLFRQ  180
QEWAFNQQVK MGLIKDQGPA KGLIHEMIFK KDGKPSSSHL FDVRDAITRS NQRMDGRSFG  240
SFDWAGSSSR KLSEALQQTH SFSSSNYYCY SHNNTNNSNN NNNNNVKSNF LDPVVINVRY  300
DHQHEDLSRL ELHKSSEDER RVRGNNCKTK EQKTGLVEKD GMPNLQLSLS TSPMFVDKDE  360
DNEKKRIEAA EEQEVEVKVD SSLSLSLSPP SSMKGTAKSS NLKLVESGSS SSSRSSNNNK  420
AALGLSTLDL TMSIRALE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-17	39	93	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-17	39	93	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-17	39	93	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-17	39	93	3	57	Protein PHOSPHATE STARVATION RESPONSE 1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020099918.1	0.0	histone-lysine N-methyltransferase, H3 lysine-79 specific-like
TrEMBL	A0A199W1X4	0.0	A0A199W1X4_ANACO; Putative Myb family transcription factor
STRING	XP_008790063.1	1e-106	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2754	36	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	2e-36	G2-like family protein

Link Out ? help Back to Top
Phytozome	Aco000386.1