PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco000436.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

WRKY

Protein Properties

Length: 500aa MW: 53546.5 Da PI: 7.3574

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco000436.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.9	5.5e-30	236	295	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a Cpv+k+v+r+aed +++++tYeg+Hnh+ Aco000436.1 236 MNDGCQWRKYGQKISKGNPCPRAYYRCTVApACPVRKQVQRCAEDMSILITTYEGTHNHP 295 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.3E-31	221	295	IPR003657	WRKY domain
SuperFamily	SSF118290	1.31E-26	229	296	IPR003657	WRKY domain
PROSITE profile	PS50811	27.198	231	297	IPR003657	WRKY domain
SMART	SM00774	8.6E-36	236	296	IPR003657	WRKY domain
Pfam	PF03106	2.6E-26	237	295	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006952	Biological Process	defense response
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence Send to blast
MEVVMMRKAE EFIFEAHEEI GKDEKWLLQL GNRTPIAERG FTRSPSLTER ESSISMQAQR 60 LEATKAEMGE VREENERLKM LLARIVEDYK SLQSQFSNLI QQERGKTPVA SPTDINDFHE 120 PELVSLRLGP SSSTHEREEK LSANKKRGED HDGGGLSLAL ERKFEGSRNG TNEVPTLNLS 180 SENSFEDTKE QEAGEPWPPS KIHKNNVRND DDEVSQQLQV KKARVSVRAR CDTPTMNDGC 240 QWRKYGQKIS KGNPCPRAYY RCTVAPACPV RKQVQRCAED MSILITTYEG THNHPLAASA 300 TAMASTTSAA ATMLVHGAAT SSAAASAAAA LHGVSGYPSP RHFYLPNPTI SSNPSYPTIT 360 LDLTQPFDSA RVSSPLGLAL SGKGSNALGA SWGNNSGYSN QAAYSTLYQS SYLHRGAANP 420 SAGAAATETI ARAITADPSF RSALAAAITS YVGGGEGGAA VRLGEYMGAA GEGGAGAQNG 480 SSLGFLRHSL GFPSSRSGK*

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence Send to blast

MEVVMMRKAE EFIFEAHEEI GKDEKWLLQL GNRTPIAERG FTRSPSLTER ESSISMQAQR  60
LEATKAEMGE VREENERLKM LLARIVEDYK SLQSQFSNLI QQERGKTPVA SPTDINDFHE  120
PELVSLRLGP SSSTHEREEK LSANKKRGED HDGGGLSLAL ERKFEGSRNG TNEVPTLNLS  180
SENSFEDTKE QEAGEPWPPS KIHKNNVRND DDEVSQQLQV KKARVSVRAR CDTPTMNDGC  240
QWRKYGQKIS KGNPCPRAYY RCTVAPACPV RKQVQRCAED MSILITTYEG THNHPLAASA  300
TAMASTTSAA ATMLVHGAAT SSAAASAAAA LHGVSGYPSP RHFYLPNPTI SSNPSYPTIT  360
LDLTQPFDSA RVSSPLGLAL SGKGSNALGA SWGNNSGYSN QAAYSTLYQS SYLHRGAANP  420
SAGAAATETI ARAITADPSF RSALAAAITS YVGGGEGGAA VRLGEYMGAA GEGGAGAQNG  480
SSLGFLRHSL GFPSSRSGK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	3e-20	223	296	1	73	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269\|PubMed:20409007, ECO:0000269\|PubMed:24884371}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269\|PubMed:20409007}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020100372.1	0.0	probable WRKY transcription factor 72 isoform X1
Swissprot	A0A3Q7GFB5	1e-104	WK72A_SOLLC; WRKY transcription factor 72A
TrEMBL	A0A199W898	0.0	A0A199W898_ANACO; Putative WRKY transcription factor 72
STRING	XP_008809713.1	1e-149	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5047	38	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	2e-75	WRKY DNA-binding protein 72

Link Out ? help Back to Top
Phytozome	Aco000436.1

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]