PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco000440.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

NF-YC

Protein Properties

Length: 154aa MW: 16521.8 Da PI: 7.5195

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco000440.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	34.2	5.6e-11	33	111	19	96
NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtr.tdifdflvdiv 96 +lP+ ++k+i+++d ++ ++saea l++ +lf+ l+ + a krr ++ + aa + + +fl+d Aco000440.1 33 PSLPMGKVKRIVRMDREIAKVSAEATLLIALGADLFLASLAAGARDAALRRKRRCIRAEHVRAAAREhPPTAEFLLDCL 111 589**********************************************************988765157889999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	3.52E-13	33	109	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	5.1E-15	33	96	IPR009072	Histone-fold
Pfam	PF00808	8.3E-11	34	96	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
MEPIERERGE GEGEEEEEEG GAKELTNGGG ARPSLPMGKV KRIVRMDREI AKVSAEATLL 60 IALGADLFLA SLAAGARDAA LRRKRRCIRA EHVRAAAREH PPTAEFLLDC LSEPTPPPPP 120 KEAVAAKAAA AEKPLPRGTR RIDQFFHKPS EAS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008786575.1	9e-41	uncharacterized protein LOC103704877
TrEMBL	A0A199W7M8	9e-75	A0A199W7M8_ANACO; Uncharacterized protein
STRING	XP_008786575.1	4e-40	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13342	26	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43250.1	9e-11	nuclear factor Y, subunit C13

Link Out ? help Back to Top
Phytozome	Aco000440.1