PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco000670.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family GATA
Protein Properties Length: 141aa    MW: 15671.1 Da    PI: 10.0867
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco000670.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.71.8e-192963135
         GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                 C+ C+ttkTplWR gp+g+k+LCnaCG++y kk++
  Aco000670.1 29 CADCRTTKTPLWRGGPSGPKSLCNACGIRYSKKRR 63
                 ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.692358IPR000679Zinc finger, GATA-type
SMARTSM004016.0E-142383IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.04E-132462No hitNo description
Gene3DG3DSA:3.30.50.107.7E-172763IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.50E-122863No hitNo description
PfamPF003207.8E-172963IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402954IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MLEMDLSCEK GPGSTDPSSE ESATELRVCA DCRTTKTPLW RGGPSGPKSL CNACGIRYSK  60
KRREVWGVKE GGEREGERER ERERLEQKGR RGGRVGFEIR MLGFGAKVML KKRSMVYKKR  120
KMGEEEQAAV LLMALSSGLL *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00335DAPTransfer from AT3G06740Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020100508.16e-95GATA transcription factor 16-like
SwissprotQ9FJ107e-25GAT16_ARATH; GATA transcription factor 16
TrEMBLA0A199UCN92e-91A0A199UCN9_ANACO; GATA transcription factor 16
STRINGXP_008797400.11e-45(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24183892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.14e-23GATA transcription factor 15
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]