PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco000681.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB_related
Protein Properties Length: 244aa    MW: 27441.3 Da    PI: 4.4988
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco000681.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.33.5e-182487146
                     TSSS-HHHHHHHHHHHHHTTTT...................-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...................tWktIartmgkgRtlkqcksrwqk 46
                     rg+WT eEd++l+++++ +G g                   tW++Ia++++ gRt++++k++w++
      Aco000681.1 24 RGPWTMEEDLILINYIANHGEGrwnslarsagyvgsttfapTWSKIAKYLP-GRTDNEIKNYWRT 87
                     89*************************************************.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.5E-221895IPR009057Homeodomain-like
PROSITE profilePS5129416.2161993IPR017930Myb domain
SuperFamilySSF466892.12E-142185IPR009057Homeodomain-like
SMARTSM007172.7E-122391IPR001005SANT/Myb domain
PfamPF002491.1E-72455IPR001005SANT/Myb domain
CDDcd001672.73E-112687No hitNo description
PfamPF002491.2E-76587IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MEDHERVACS KGQSDQEEEM ELRRGPWTME EDLILINYIA NHGEGRWNSL ARSAGYVGST  60
TFAPTWSKIA KYLPGRTDNE IKNYWRTRVQ KHAKQLQCDV NSKKFKDAMR YVWIPRLIER  120
IRAASGSTSF VAPGVTDLPV TCPEISDASG SPPDSSGTSL SSPPVAEFSE SFDNWHSTLV  180
QGGEFKEGDG IHETQNDNEW IESMMISQGG YGKQEVFEFE ESGWEGGFSD NLWSLEDILF  240
MHQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020099650.11e-166transcription factor MYB108-like
TrEMBLA0A199UCT21e-178A0A199UCT2_ANACO; Transcription factor MYB108
STRINGXP_008793362.12e-66(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.17e-52myb domain protein 78