PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco000696.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

SBP

Protein Properties

Length: 975aa MW: 108130 Da PI: 6.8812

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco000696.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	127	7.4e-40	136	213	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC+adls+ ++yhrrhkvCe+h+ka++++v++ qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ Aco000696.1 136 VCQVEGCAADLSRSRDYHRRHKVCEMHAKASTAVVRNAIQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNRRRRKTHP 213 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.8E-33	131	198	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.248	134	211	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.88E-37	135	215	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	5.9E-29	137	210	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	1.87E-9	715	858	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	3.3E-7	752	861	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.13E-8	756	857	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 975 aa Download sequence Send to blast
MEAKIGSGSH LLSGTGRKSF EWDLNDWKWD GELFVATPVN GVPPGVANGA PLICSSSCLR 60 ETDLGIGGKG KGKGEVEKRR RIVPVEEGEP SDGDGSLSLK LGWNAYPTGE VDIAKSEEEE 120 SGKKTKLPGS TSNGPVCQVE GCAADLSRSR DYHRRHKVCE MHAKASTAVV RNAIQRFCQQ 180 CSRFHLLQEF DEGKRSCRRR LAGHNRRRRK THPDSTSGGA SLIDDKSSSY LLISLLRALS 240 NMHSNNFDRT EDQDQLSHLL RNLATLAGSF DTRNLSGLLQ PSQSQLPLGA SSGMSLEATN 300 MVPDSSPASE STGPMCPPSK ITCVNGGQGP QISENFLSDA VPKDCSHPTT NTMTNSPEST 360 ACRVRLNDFD LNNAYNDIQD CGVGCEKSII PSCAENSSPN YLSQTSGNSD SISTQSLSSS 420 NGDAQYQTDR IVFKLFGKYP HDLPLVLRTQ ILDWLSNSPT NIESYIRPGC VILTVYLRLS 480 EPLWQELCDY LSSYLDRLLN SSTNNFWRSG WMYVKVRHQI AFIYNGQVVL DVPLPLGCPD 540 NSGILCVKPV AVPHSTTADF TVKVFSLARS TTRLFCSFEG KYLVQKMTVV LTEESGADSE 600 HEELVCLSFC CSLPDASGRG FIEVEDRGLS NSFFPFIVTD QEVCSEIRTL ETIIEIATNN 660 NDSQGREDKE NSRNLAINFL NELGWLLRMH FLMSRLEKVE FHREAFHLSR FSWLISFAME 720 HDWCAVVKKL LDILFSGTID LGARSPREIA LSENLLHRAA GRCCRDMVEL LLKYTPEKSL 780 KESSNERLLF RPDFLGPENI TPLHIAAAGR GSESIVDALT DDSEMVGINA WRNVRDSVGY 840 TPEDYARMRG HESYIQLVQK KLNTKIGKHY FVVNIHSDNH PKYTDADKPF KPSFGIAKSK 900 LMRPSQKPCC NLCSRQLMAH HNSMARTLLY RPAMLAMVGV ATVCVCVGIL FKTMPEVFFV 960 SPSFRWELLG YGST*

Sequence ? help Back to Top

Protein Sequence Length: 975 aa Download sequence Send to blast

MEAKIGSGSH LLSGTGRKSF EWDLNDWKWD GELFVATPVN GVPPGVANGA PLICSSSCLR  60
ETDLGIGGKG KGKGEVEKRR RIVPVEEGEP SDGDGSLSLK LGWNAYPTGE VDIAKSEEEE  120
SGKKTKLPGS TSNGPVCQVE GCAADLSRSR DYHRRHKVCE MHAKASTAVV RNAIQRFCQQ  180
CSRFHLLQEF DEGKRSCRRR LAGHNRRRRK THPDSTSGGA SLIDDKSSSY LLISLLRALS  240
NMHSNNFDRT EDQDQLSHLL RNLATLAGSF DTRNLSGLLQ PSQSQLPLGA SSGMSLEATN  300
MVPDSSPASE STGPMCPPSK ITCVNGGQGP QISENFLSDA VPKDCSHPTT NTMTNSPEST  360
ACRVRLNDFD LNNAYNDIQD CGVGCEKSII PSCAENSSPN YLSQTSGNSD SISTQSLSSS  420
NGDAQYQTDR IVFKLFGKYP HDLPLVLRTQ ILDWLSNSPT NIESYIRPGC VILTVYLRLS  480
EPLWQELCDY LSSYLDRLLN SSTNNFWRSG WMYVKVRHQI AFIYNGQVVL DVPLPLGCPD  540
NSGILCVKPV AVPHSTTADF TVKVFSLARS TTRLFCSFEG KYLVQKMTVV LTEESGADSE  600
HEELVCLSFC CSLPDASGRG FIEVEDRGLS NSFFPFIVTD QEVCSEIRTL ETIIEIATNN  660
NDSQGREDKE NSRNLAINFL NELGWLLRMH FLMSRLEKVE FHREAFHLSR FSWLISFAME  720
HDWCAVVKKL LDILFSGTID LGARSPREIA LSENLLHRAA GRCCRDMVEL LLKYTPEKSL  780
KESSNERLLF RPDFLGPENI TPLHIAAAGR GSESIVDALT DDSEMVGINA WRNVRDSVGY  840
TPEDYARMRG HESYIQLVQK KLNTKIGKHY FVVNIHSDNH PKYTDADKPF KPSFGIAKSK  900
LMRPSQKPCC NLCSRQLMAH HNSMARTLLY RPAMLAMVGV ATVCVCVGIL FKTMPEVFFV  960
SPSFRWELLG YGST*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-29	131	210	5	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	77	81	KRRRI

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020100018.1	0.0	squamosa promoter-binding-like protein 6 isoform X1
Refseq	XP_020100019.1	0.0	squamosa promoter-binding-like protein 6 isoform X1
Swissprot	Q75LH6	0.0	SPL6_ORYSJ; Squamosa promoter-binding-like protein 6
TrEMBL	A0A199UCV7	0.0	A0A199UCV7_ANACO; Squamosa promoter-binding-like protein 6
STRING	XP_008810336.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1998	38	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	0.0	squamosa promoter-binding protein-like 12

Link Out ? help Back to Top
Phytozome	Aco000696.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]