PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco000744.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family NAC
Protein Properties Length: 320aa    MW: 36332.1 Da    PI: 5.9995
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco000744.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.25.4e-52231511129
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                  lppGfrFhPtdeelv++yL+ kv +  l     i evd++++ePw+Lp ++k +e+ewyf+s rd+ky+tg r+nrat +gyWkatgkd+ev+ + +g
  Aco000744.1  23 LPPGFRFHPTDEELVTFYLASKVFNGGLCG-VDIVEVDLNRCEPWELPDAAKMGEREWYFYSLRDRKYPTGLRTNRATGAGYWKATGKDREVHGAaNG 119
                  79************************9777.34***************8888999**************************************98799 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrle 129
                  +lvg+kktLvfykgrap+gekt+Wv+heyrle
  Aco000744.1 120 ALVGMKKTLVFYKGRAPRGEKTKWVLHEYRLE 151
                  99****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.03E-6117172IPR003441NAC domain
PROSITE profilePS5100558.30623172IPR003441NAC domain
PfamPF023652.0E-2624150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MHTNMGELVW ELFGEETYNE QGLPPGFRFH PTDEELVTFY LASKVFNGGL CGVDIVEVDL  60
NRCEPWELPD AAKMGEREWY FYSLRDRKYP TGLRTNRATG AGYWKATGKD REVHGAANGA  120
LVGMKKTLVF YKGRAPRGEK TKWVLHEYRL EGDYACRHRC KEEWVICRIF HKTGGDKKNQ  180
YYPNPSYTIN PSSSTPSTCI LPFLDPQTLE TPLQTLHNHH QPYFHLNQEP INPLFPLPPL  240
PSFACSSTFL PSFPKSPPKE EDTNALLNPN EEAMFPANWL ETYIQNPFVY EMGFSLPGPG  300
APVYDVPLLG YTATGESGPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-482317817171NO APICAL MERISTEM PROTEIN
1ut4_B6e-482317817171NO APICAL MERISTEM PROTEIN
1ut7_A6e-482317817171NO APICAL MERISTEM PROTEIN
1ut7_B6e-482317817171NO APICAL MERISTEM PROTEIN
3swm_A7e-482317820174NAC domain-containing protein 19
3swm_B7e-482317820174NAC domain-containing protein 19
3swm_C7e-482317820174NAC domain-containing protein 19
3swm_D7e-482317820174NAC domain-containing protein 19
3swp_A7e-482317820174NAC domain-containing protein 19
3swp_B7e-482317820174NAC domain-containing protein 19
3swp_C7e-482317820174NAC domain-containing protein 19
3swp_D7e-482317820174NAC domain-containing protein 19
4dul_A6e-482317817171NAC domain-containing protein 19
4dul_B6e-482317817171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00241DAPTransfer from AT1G76420Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020114268.10.0protein CUP-SHAPED COTYLEDON 3-like
SwissprotQ9S8512e-96NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A2H3YV281e-148A0A2H3YV28_PHODC; protein CUP-SHAPED COTYLEDON 3
STRINGXP_008804254.11e-149(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112373341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.11e-98NAC family protein
Publications ? help Back to Top
  1. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  2. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  3. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  4. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  5. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]