PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco000751.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

MYB_related

Protein Properties

Length: 289aa MW: 31275.1 Da PI: 5.0552

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco000751.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38.4	2.8e-12	15	65	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48 W t+E++ll++av ++G+++W+++a +++ +t+ +c++r++ ++ Aco000751.1 15 WGTWEELLLACAVSRHGTRSWDSVAMEVQarspfaHLLTPHSCRLRFRHLR 65 *********************************88********9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.97E-6	10	67	IPR009057	Homeodomain-like
SMART	SM00717	3.6E-5	11	67	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-4	15	64	IPR009057	Homeodomain-like
CDD	cd00167	8.39E-5	15	47	No hit	No description
Pfam	PF00249	1.9E-11	15	64	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MVRSEDPEGE KEEIWGTWEE LLLACAVSRH GTRSWDSVAM EVQARSPFAH LLTPHSCRLR 60 FRHLRRRFSD ADPDPVDAVP WLEELRVAEF RREVERYDLS IVYASSESLL ASLQLKVNRL 120 KEERERSPPE TESGEGKPDP NGEREAKDAG SSGSAPELAG DRISGGSCKE SNSTDLKEAA 180 REEEEGRPGE EEKPPEESAP AAAGGGGGGG PKAAVEESCD GSSGGAAAAA APPTRGGESG 240 ESATETKEGE AEKESSDVQS SARRRRRRRR RRRRTGPLPP SAPLNHSR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	263	273	RRRRRRRRRRR
2	265	273	RRRRRRRRR
3	266	273	RRRRRRRR
4	267	273	RRRRRRR
5	269	274	RRRRRT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010943521.1	5e-73	uncharacterized protein LOC105061234 isoform X1
TrEMBL	A0A199UZR3	1e-104	A0A199UZR3_ANACO; Uncharacterized protein
STRING	GSMUA_Achr8P25530_001	1e-60	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3181	26	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42150.1	5e-19	DNA-binding bromodomain-containing protein

Link Out ? help Back to Top
Phytozome	Aco000751.1