PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco000773.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 459aa    MW: 50278.8 Da    PI: 9.2846
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco000773.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.2e-12385430655
                  HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +++Er RR ri +++ +L+el+P+     +k  + a++L +Av+YIk+Lq
  Aco000773.1 385 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKDLQ 430
                  689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.25379429IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-16382441IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.09E-13383434No hitNo description
Gene3DG3DSA:4.10.280.104.1E-15384441IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-14385435IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-9385430IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MYGSPQAARS KDLNLPVSAE PAFGHRKEEK ELLQRHHHHH HHRDHQQHQH HNPPPPPPPP  60
HHQQQQQQQQ QMSSGLLRYR SAPTALLGEV VDDFLPVRPS SPETETMFAR FLATSDLRDE  120
IREKPPSAAA QRSSTFASAM DEAAASQQQQ QQQQQQMMYH SHHQPMPSHG SVESLYRTAS  180
SAAIDLEPMK SDGATNNLIR QSSSPPGIFS HVNVDNGYSV MRGIGGFRNG NNSLGAVNAA  240
NTNSTSNRMK GQISFSSRQG SLMSQISGMG SEGGAIGGSS PEDGGNSGGT AAGGGRYIPG  300
YPLGSWDDPP LLSDHFSGSL KRGREAEGKI ISGLNQSEHQ NGLMHQFSLP KTSSEMAAIE  360
KFLQFHDAVP CKIRAKRGCA THPRSIAERV RRTRISERMR KLQELVPNMD KQTNTADMLD  420
LAVDYIKDLQ KQVKTLTENR ASCTCSSSKQ KQYQNPAA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBMTransfer from LOC_Os08g39630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6620430.0KM662043.1 Ananas bracteatus clone 45301b microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020082673.10.0transcription factor bHLH130-like
TrEMBLA0A199VBP50.0A0A199VBP5_ANACO; Transcription factor bHLH130
STRINGXP_008776552.11e-168(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.13e-70bHLH family protein