PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco000852.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family NF-YC
Protein Properties Length: 149aa    MW: 16597 Da    PI: 5.9192
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco000852.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC145.31.4e-4537134498
        NF-YC   4 sfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 
                  +fw++q   +e++ d+++h lPlarik+i+kadedv+m++aeaP+l+++ace+fi++lt+r+w ha+en+rrtl+++d+a av+rtd+fdfl+d+v  
  Aco000852.1  37 AFWAEQwreVERTVDVREHILPLARIKRIMKADEDVRMVAAEAPALFARACEMFIVDLTFRAWAHAHENRRRTLQRADVAVAVARTDVFDFLLDVVSL 134
                  79**9998899************************************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.61E-2845128IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.4E-3257132IPR009072Histone-fold
PfamPF008087.4E-2057119IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MDPSGDGSPP PPPPAIVGAA AVVPYAPFPA PPPPREAFWA EQWREVERTV DVREHILPLA  60
RIKRIMKADE DVRMVAAEAP ALFARACEMF IVDLTFRAWA HAHENRRRTL QRADVAVAVA  120
RTDVFDFLLD VVSLHDHPAP YADYYIHP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B3e-4442132393NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020083574.11e-101nuclear transcription factor Y subunit C-6-like
SwissprotQ9XE332e-47NFYC6_ORYSJ; Nuclear transcription factor Y subunit C-6
TrEMBLA0A199VE875e-99A0A199VE87_ANACO; Nuclear transcription factor Y subunit C-3
STRINGXP_008802191.16e-48(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91742145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54830.33e-40nuclear factor Y, subunit C3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]