PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco000890.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family NF-YB
Protein Properties Length: 193aa    MW: 20999.6 Da    PI: 6.7184
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco000890.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB128.72e-40892695
        NF-YB  6 rflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95
                  ++Pianv+rim++  P++   s daket+qecvse+isf+t+ea+++cqre+rkti++dd+lwa+++lGf+dyv+pl +yl++yr+leg
  Aco000890.1  8 TVMPIANVIRIMRH--PGD---SSDAKETIQECVSEYISFITGEANERCQREQRKTITADDVLWAMSKLGFDDYVHPLALYLRQYRQLEG 92
                 689*********97..666...78****************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.5E-36694IPR009072Histone-fold
SuperFamilySSF471131.22E-29996IPR009072Histone-fold
PfamPF008085.4E-201068IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006158.3E-153250No hitNo description
PROSITE patternPS0068503551IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006158.3E-155169No hitNo description
PRINTSPR006158.3E-157088No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MRVGAAATVM PIANVIRIMR HPGDSSDAKE TIQECVSEYI SFITGEANER CQREQRKTIT  60
ADDVLWAMSK LGFDDYVHPL ALYLRQYRQL EGGDHRLPIV IKPPPPHAPQ NFAAVPNPNA  120
NANANAVPAV QQYQMHQYLG HDAYGNGTVG GYYAARGVFG GPDHESGGSS SSQLFPAAMQ  180
AMPNFDHPFG FK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A2e-44189497NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2880363e-63AB288036.1 Oryza sativa Japonica Group OsHAP3E mRNA for HAP3 subunit of HAP complex, complete cds.
GenBankAK1078613e-63AK107861.1 Oryza sativa Japonica Group cDNA clone:002-134-B07, full insert sequence.
GenBankAP0041793e-63AP004179.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1124_G07.
GenBankAP0149583e-63AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankAY0621843e-63AY062184.1 Oryza sativa (indica cultivar-group) HAP3 transcriptional-activator (LEC1B) mRNA, complete cds.
GenBankAY0621853e-63AY062185.1 Oryza sativa (indica cultivar-group) HAP3 transcriptional-activator (LEC1B) gene, complete cds.
GenBankAY2642843e-63AY264284.1 Oryza sativa (indica cultivar-group) leafy cotyledon 1 gene, complete cds.
GenBankCP0126103e-63CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020114134.18e-84LOW QUALITY PROTEIN: nuclear transcription factor Y subunit B-6-like, partial
TrEMBLA0A199W8361e-124A0A199W836_ANACO; Nuclear transcription factor Y subunit B-6
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.22e-46nuclear factor Y, subunit B6