PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco000913.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 488aa    MW: 53177.2 Da    PI: 6.3323
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco000913.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.46.2e-09312360355
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Aco000913.1 312 NSHSLAERLRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 360
                  58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.32E-11307364No hitNo description
SuperFamilySSF474596.41E-17307378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.51309359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-16310376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-6312360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.6E-10315365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MDMNEKEKLG LEKNEDHMSY HASDISTAWQ QFNSSSGAIG QEIQMGSATC PSNPMVDSFN  60
PSLWNHHPSS QNLVGLSENN AHVGNPPMGL NPSSFFPKGG TFLPSLPKIP PPPILPHFSA  120
DTGFIERAAR FSCFGSGNLS GMVNPFGASE ILSPYANPSK FSGQKSEMSV DEASENAPLP  180
VNDHLSSIRS PRERRDDANS LRESAEPEFS GGGEEEAPNL ATAARDNSSS KGPNAKKRKR  240
SNQGGAETEQ VEGAPQVPIE TTKENMDNKQ KNEQNSSTVG TSKASGKQAK DNSDLPKEDY  300
IHVRARRGQA TNSHSLAERL RREKISERMK FLQDLVPGCS KVTGKAVMLD EIINYVQSLQ  360
RQVEFLSMKL AAVNPRLDFN IEGLLSKELF SRGGPSSAIG FSPDMIHPHL HPSQHGMVQA  420
GMPSIANPSD VLRRVMNAQP TSINGYKEPT SQMPNTWDEE LQNVMQMSYP PLNAQELNSK  480
PRDGFPL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1235240KKRKRS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020114802.10.0transcription factor bHLH49
TrEMBLA0A199VA480.0A0A199VA48_ANACO; Transcription factor bHLH49
STRINGXP_008788970.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29093785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.23e-90bHLH family protein