PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco001094.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

G2-like

Protein Properties

Length: 233aa MW: 25587.1 Da PI: 8.1403

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco001094.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	77.3	1.9e-24	22	78	1	51
G2-like 1 kprlrWtpeLHerFveaveqLGGse......kAtPktilelmkvkgLtlehvkSHLQ 51 kpr+rWt eLHe+F++av++LGG++ +AtPk+++++m+v+gLtl+h+kSHLQ Aco001094.1 22 KPRVRWTRELHEQFLRAVSHLGGADihslisEATPKSVMRMMGVPGLTLYHLKSHLQ 78 79*******************865555558*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.7E-24	20	85	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.43E-13	21	86	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.7E-17	22	82	IPR006447	Myb domain, plants
Pfam	PF00249	4.3E-7	24	79	IPR001005	SANT/Myb domain
Pfam	PF14379	2.0E-10	87	113	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MGSTEMPDQT GNSRLALPAD AKPRVRWTRE LHEQFLRAVS HLGGADIHSL ISEATPKSVM 60 RMMGVPGLTL YHLKSHLQAL FAAVKKKVQK HLQLRIEAQG KYLQSVLRKA HETLAAYSSS 120 SITELSELVS AAETLCPSSL LSQTIFNPNR AQQGDCSTDS CVTSEEFERE NKMGCKIKSS 180 LSKGGDELTG FKRSCSRING EYGDERPINA KRSLCETENG GFMLQEQIDL NS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-13	21	78	1	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-13	21	78	1	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-13	22	78	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-13	22	78	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-13	22	78	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-13	22	78	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-13	21	78	1	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-13	21	78	1	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-13	21	78	1	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-13	21	78	1	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-13	21	78	1	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-13	21	78	1	52	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN862704	6e-56	JN862704.1 Ananas comosus clone PCT10-1 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020114299.1	1e-149	myb-related protein 2-like
Refseq	XP_020114307.1	1e-149	myb-related protein 2-like
Swissprot	Q9SQQ9	2e-28	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A199V175	1e-148	A0A199V175_ANACO; Myb family transcription factor APL
STRING	XP_008783889.1	8e-50	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP20734	6	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.1	8e-34	G2-like family protein

Link Out ? help Back to Top
Phytozome	Aco001094.1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]