PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco001133.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 86aa    MW: 9663.9 Da    PI: 7.3645
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco001133.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH283.8e-0911511554
                 HHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH 15 riNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                 +iN+ +++L++llP  a + +s + s   +L+++++YIksL
  Aco001133.1 11 EINELISKLQSLLPDqARRRGSSRASATKVLKETCNYIKSL 51
                 7**************8889999******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.099151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.02E-91073IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-91068IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-61151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MSSRSRITEE EINELISKLQ SLLPDQARRR GSSRASATKV LKETCNYIKS LHREVDDLSD  60
RLSDLMASMD SDSPQAEILR NLLRS*
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of grain size. Binds the transcription repressor APG and forms a heterodimer of antagonistic basic helix-loop-helix transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea (By similarity). {ECO:0000250}.
UniProtAtypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of grain size. Binds the transcription repressor APG and forms a heterodimer of antagonistic basic helix-loop-helix transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea. {ECO:0000269|PubMed:23136524}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020083210.13e-53transcription factor ILI5-like
SwissprotA2X9L88e-39ILI5_ORYSI; Transcription factor ILI5
SwissprotQ6YUX08e-39ILI5_ORYSJ; Transcription factor ILI5
TrEMBLA0A199V5Q96e-52A0A199V5Q9_ANACO; Transcription factor ILI5
STRINGXP_008784341.17e-41(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92838145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.12e-13bHLH family protein