PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco001282.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

bHLH

Protein Properties

Length: 3098aa MW: 345968 Da PI: 9.0255

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco001282.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.3	2e-06	2928	2969	8	54
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r r R +riN +++Lr+llP+a ++++Ka+ L ++v+++++L Aco001282.1 2928 RTRDRPHRINGHLATLRSLLPSA-----TRMDKAALLGEVVRHVREL 2969 669999***************.....9*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00129	7.4E-68	108	432	IPR001752	Kinesin motor domain
Gene3D	G3DSA:3.40.850.10	1.9E-99	109	425	IPR001752	Kinesin motor domain
PROSITE profile	PS50067	75.621	110	424	IPR001752	Kinesin motor domain
SuperFamily	SSF52540	2.18E-82	110	464	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Pfam	PF00225	1.1E-68	116	423	IPR001752	Kinesin motor domain
PRINTS	PR00380	4.0E-23	182	203	IPR001752	Kinesin motor domain
PRINTS	PR00380	4.0E-23	325	343	IPR001752	Kinesin motor domain
PRINTS	PR00380	4.0E-23	374	395	IPR001752	Kinesin motor domain
Gene3D	G3DSA:3.40.720.10	1.2E-25	1371	1651	IPR017849	Alkaline phosphatase-like, alpha/beta/alpha
SuperFamily	SSF53649	4.42E-34	1371	1647	IPR017850	Alkaline-phosphatase-like, core domain
Pfam	PF01663	1.7E-8	1508	1586	IPR002591	Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase
Gene3D	G3DSA:2.30.30.160	1.2E-5	2370	2407	No hit	No description
PROSITE profile	PS50812	9.275	2373	2413	IPR000313	PWWP domain
PROSITE profile	PS50888	11.42	2920	2969	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.27E-7	2926	2975	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.8E-7	2926	2975	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.2E-6	2930	2974	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.30E-5	2930	2972	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007018	Biological Process	microtubule-based movement
GO:0008152	Biological Process	metabolic process
GO:0009903	Biological Process	chloroplast avoidance movement
GO:0009904	Biological Process	chloroplast accumulation movement
GO:0005829	Cellular Component	cytosol
GO:0005886	Cellular Component	plasma membrane
GO:0009504	Cellular Component	cell plate
GO:0009524	Cellular Component	phragmoplast
GO:0009941	Cellular Component	chloroplast envelope
GO:0003777	Molecular Function	microtubule motor activity
GO:0005524	Molecular Function	ATP binding
GO:0008017	Molecular Function	microtubule binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 3098 aa Download sequence Send to blast
MAEPKNRWTW EVPGFEPRRS YEPQESSVAH TVVRRLSVSP STLLPRAEAP PRPSVAAKLQ 60 RLKEQVKHAR NDYLELRQEA TDLREYSSAK LDRVTRYLGF LADRAHKLGN VKVYCRTRPL 120 FEEEGSSVVE FPDDFTIRVN TGDDSLANPK KDYEFDRVYG PHVGQGELFR DVQPFIQSAL 180 DGYNVCLFAY GQTHSGKTHT MEGSIHERGL YLRSFEELFD LSNLDTTSTS QYSFYVTAFE 240 LYNDQVQDLL LESRSAMPRV RMGPEDSFVE LVHERVQNPL DFSKVLSAAL KKRGTDSSKA 300 IVSHLIVTIH IHFTNCITGD RIYSKLSLVD LPGSECLLVE DASRDHVTDF LHVSKSLSAL 360 GDVLSSLTSK KEIVPYENSR MTQILADSLG GGSKTLLIAH LCPNALNLPR TLSTLNFSAR 420 ARNTELSLGN RDTIKKWRDV ANDSRKELQQ KEREVQDLRN EVLQLKLALD GANDQCTLLF 480 NEVQKAWKVS FTLQADLKSE NLMLADKQKA EKEQNNQLKN QVAHLLQLEQ EQKMQIHERD 540 LTIKSLQAKL KTIESQLNEA LNSSDSRSTL GSESGSTGVL STPKMEASVD SSSVTKKLEE 600 ELSKRDALIE KLHEENEKLF DRLTEKSGLG GSPQVSSPST KRTVNTQSRD LSRSDTSRGR 660 SQDVLQLPRT QDKTVTTGAL VKSSNEIAKT TPAGEYLTTA LMDFDPDQFE SFAAIADGAN 720 KLLMLVLAAV IKAGAAREHE ILAEIRDAVF AFIRRMEPRK VMDTMLVSRV RILYIRSLLA 780 RSPELQSIKV SPVERFLEKA NTGRSRSSSR GSSPGRSPVY HDSSTRSSLI DEHVHGFKVN 840 IKQEKKSKFS NIVLKLRGID QETWRQHITG GKLREITEEA KAFAIGNKAL AALFVHTPAG 900 ELQRQIRLWL AENFEFLSVT GGDALGGTTG QLELLSTAIM DGWMAGLGTA QLPSTDALGQ 960 LLSDYSKRVY TSQLQHLKDI AGTLATEEAD DLAHVNKLRS ALESVDHKRR RILQQMRNDT 1020 ALLTKEEGGS PIQNPSTAAE DARLASLISL DAILKQVKEL MRQTSVSSLT KTKKKAMLAS 1080 LDELMGRMPS LLDIDHPCAQ KEIMGARRAV ESIPEVEGQF DEAPRGLNSY SESTSTGESE 1140 VSQWNVLQFN TGSTTPFIIK CGANSNCELV IKADARVQEP KGGEIIRVLP RPTVLADMGF 1200 EDIKQAFEQL PESVSLLALA RTADGTRARY SRLYRTLASK VPALKDLSTI GNPQNEAKMS 1260 PRKDRTSESY GGVISPRFPS TYFYLQMSSS LTCTRLTIWA FAAVLLQIAG LSLFLIGFFP 1320 VKPTLPGFSG PESYRMPTSD PVSDAEEVEE LPPDRLRSLY REVSKIPPVY DRLILMVIDG 1380 LPAEFVLGRG NKPPTKNMME AMPYTHSLLS SGKAAAYHAK AAPPTVTMPR LKAMVSGAIG 1440 GFLDVAFNFN TQAMLEDNLL EQFYRIGWKL VIHGDETWIK LFPRLFHRQD GVSSFYVKDT 1500 VEVDFNVSRH LEAEFASTDW NFLILHYLGL DHVGHIGGRQ SILMAPKLKE MDDVIKRIHM 1560 NSILDQENSD SHTLLVVVSD HGMTDGGNHG GSSYEETDSL ALFIGHGVEE SNYSPYDHNE 1620 AFQVDIAPTL ALLFGVPIPK NNIGVLLTKL FDSLTDDQRL RSLELNSWQL LRLLKAHLPG 1680 LHCGESSCYS CEKGLETNVP TSEAKQRLCY LFSKAISAHN SWQFRQHSDF ISADINYFQV 1740 AAESYNDFLR NASEWLSHRA TDKPVNVLMS AIIMMLVSSV LLMGIVFCLF RRVHFAQVGC 1800 CSQLEDPYKI LHLDEVFVFI VIFLHVLSLG ASSLVEEEQY TWHFLTSTLY LIFLSRTIES 1860 LLKRPNSVTL QNKDDKTVLP HSSPTDARNN SGHKFTKFRP SKINNHGTCR LFSVVVVLIC 1920 GRLLRGWHQG GVNWIYLPDI SKLLVHAGTS TIKVCQILSL FAIIILGSHA IFKLKSTTNF 1980 VYGVWSSLLL SAFLVMLHTM ENHIYDLEPM NLSTTSIAQV FYVVASTSAV LTFLASPWIF 2040 PVYSMEKQMV YQVRSNSCST KQRDSFLLSI RETTYLIGTT YTAFWCLLQL LIQQPINAIP 2100 ILLIYLQILF SIIYFSADRS FHRQWVEVAA IYFLGLAGHF GLGNTNSLAT IDVAGAFIGI 2160 SSHSAVLSGI LMFVITYASP SLSYLSMVMY IDMKDITFIS STHEYEWSIF LEKMIALPCL 2220 LPLLFNSLVL TSFTIILLLM RNHLFVWSVF SPKYLYVCAA TVCVYIGVFI VAATGLYTYS 2280 VFCFRTRNPQ EKCPQVLRDN VISHSQTNAH IISAFENSTY PVQEMCLESG CSKVKLETIM 2340 RRREVGNSES HPIVDQEHTK PLDNHQYRHR RRSGDITWIK ISDHSWWPSQ VVDEESVANK 2400 PKKKAKDEVR KRENISTREL LKKTLEQDIS KMKSAGKSKR KLREPKDNDA AKASNHKKQK 2460 QDSRGGNQEE TVSASPVITS GKSEAKKVYT RSEALRQREA KLEVTRESTK MENAKPEPRK 2520 ENIMNQCTRR EQNATKLSRK ASVKNISGQD GLRRSSRINA KEQTSERVAS ETSPPGDAGG 2580 RQDKMGKANE TKKAQNGMAG HNNQKRVGFG HPESEVSEEE IRAMVRDVIF RERTSKQSVN 2640 GKPNAKEEIG NGASEVGNAK GEGFGKKERE HAEKQVNIVS SAETLTGLVR KEGPEVGTVK 2700 KDSFRKQKIE DAEDRVTKKI VAKTSREKEV KQLDTEEKES NNATNCTLRT KMFDKDNSTT 2760 LKPNEIKEQE TAKGRDKASK HESRRQGNAG IPTVTEDVGE ACKAKKIGKV DPNKSKQLDF 2820 NGQVVENGSC RASKYKGSGE KETRKQGEAK SGACQGKPFN QNDSKQKENS NIKMHQSTVT 2880 TTPIKHAVTE ERGHLSARQL RVMQRLGLVA PPEMLRRWKW TAEIRSRRTR DRPHRINGHL 2940 ATLRSLLPSA TRMDKAALLG EVVRHVRELR EKVDDVAVGV VVPGEGDEIG VDQVGGPGDD 3000 EGKRVRAWVC CADRPGLMGD LNRAVGSVRA KAVRAEMATV GGRTRSVLEV EMLGVAGGAG 3060 PVRSALQMAL RSVLLNRDAG PVEIYKRPRL SSRFSKA*

Sequence ? help Back to Top

Protein Sequence Length: 3098 aa Download sequence Send to blast

MAEPKNRWTW EVPGFEPRRS YEPQESSVAH TVVRRLSVSP STLLPRAEAP PRPSVAAKLQ  60
RLKEQVKHAR NDYLELRQEA TDLREYSSAK LDRVTRYLGF LADRAHKLGN VKVYCRTRPL  120
FEEEGSSVVE FPDDFTIRVN TGDDSLANPK KDYEFDRVYG PHVGQGELFR DVQPFIQSAL  180
DGYNVCLFAY GQTHSGKTHT MEGSIHERGL YLRSFEELFD LSNLDTTSTS QYSFYVTAFE  240
LYNDQVQDLL LESRSAMPRV RMGPEDSFVE LVHERVQNPL DFSKVLSAAL KKRGTDSSKA  300
IVSHLIVTIH IHFTNCITGD RIYSKLSLVD LPGSECLLVE DASRDHVTDF LHVSKSLSAL  360
GDVLSSLTSK KEIVPYENSR MTQILADSLG GGSKTLLIAH LCPNALNLPR TLSTLNFSAR  420
ARNTELSLGN RDTIKKWRDV ANDSRKELQQ KEREVQDLRN EVLQLKLALD GANDQCTLLF  480
NEVQKAWKVS FTLQADLKSE NLMLADKQKA EKEQNNQLKN QVAHLLQLEQ EQKMQIHERD  540
LTIKSLQAKL KTIESQLNEA LNSSDSRSTL GSESGSTGVL STPKMEASVD SSSVTKKLEE  600
ELSKRDALIE KLHEENEKLF DRLTEKSGLG GSPQVSSPST KRTVNTQSRD LSRSDTSRGR  660
SQDVLQLPRT QDKTVTTGAL VKSSNEIAKT TPAGEYLTTA LMDFDPDQFE SFAAIADGAN  720
KLLMLVLAAV IKAGAAREHE ILAEIRDAVF AFIRRMEPRK VMDTMLVSRV RILYIRSLLA  780
RSPELQSIKV SPVERFLEKA NTGRSRSSSR GSSPGRSPVY HDSSTRSSLI DEHVHGFKVN  840
IKQEKKSKFS NIVLKLRGID QETWRQHITG GKLREITEEA KAFAIGNKAL AALFVHTPAG  900
ELQRQIRLWL AENFEFLSVT GGDALGGTTG QLELLSTAIM DGWMAGLGTA QLPSTDALGQ  960
LLSDYSKRVY TSQLQHLKDI AGTLATEEAD DLAHVNKLRS ALESVDHKRR RILQQMRNDT  1020
ALLTKEEGGS PIQNPSTAAE DARLASLISL DAILKQVKEL MRQTSVSSLT KTKKKAMLAS  1080
LDELMGRMPS LLDIDHPCAQ KEIMGARRAV ESIPEVEGQF DEAPRGLNSY SESTSTGESE  1140
VSQWNVLQFN TGSTTPFIIK CGANSNCELV IKADARVQEP KGGEIIRVLP RPTVLADMGF  1200
EDIKQAFEQL PESVSLLALA RTADGTRARY SRLYRTLASK VPALKDLSTI GNPQNEAKMS  1260
PRKDRTSESY GGVISPRFPS TYFYLQMSSS LTCTRLTIWA FAAVLLQIAG LSLFLIGFFP  1320
VKPTLPGFSG PESYRMPTSD PVSDAEEVEE LPPDRLRSLY REVSKIPPVY DRLILMVIDG  1380
LPAEFVLGRG NKPPTKNMME AMPYTHSLLS SGKAAAYHAK AAPPTVTMPR LKAMVSGAIG  1440
GFLDVAFNFN TQAMLEDNLL EQFYRIGWKL VIHGDETWIK LFPRLFHRQD GVSSFYVKDT  1500
VEVDFNVSRH LEAEFASTDW NFLILHYLGL DHVGHIGGRQ SILMAPKLKE MDDVIKRIHM  1560
NSILDQENSD SHTLLVVVSD HGMTDGGNHG GSSYEETDSL ALFIGHGVEE SNYSPYDHNE  1620
AFQVDIAPTL ALLFGVPIPK NNIGVLLTKL FDSLTDDQRL RSLELNSWQL LRLLKAHLPG  1680
LHCGESSCYS CEKGLETNVP TSEAKQRLCY LFSKAISAHN SWQFRQHSDF ISADINYFQV  1740
AAESYNDFLR NASEWLSHRA TDKPVNVLMS AIIMMLVSSV LLMGIVFCLF RRVHFAQVGC  1800
CSQLEDPYKI LHLDEVFVFI VIFLHVLSLG ASSLVEEEQY TWHFLTSTLY LIFLSRTIES  1860
LLKRPNSVTL QNKDDKTVLP HSSPTDARNN SGHKFTKFRP SKINNHGTCR LFSVVVVLIC  1920
GRLLRGWHQG GVNWIYLPDI SKLLVHAGTS TIKVCQILSL FAIIILGSHA IFKLKSTTNF  1980
VYGVWSSLLL SAFLVMLHTM ENHIYDLEPM NLSTTSIAQV FYVVASTSAV LTFLASPWIF  2040
PVYSMEKQMV YQVRSNSCST KQRDSFLLSI RETTYLIGTT YTAFWCLLQL LIQQPINAIP  2100
ILLIYLQILF SIIYFSADRS FHRQWVEVAA IYFLGLAGHF GLGNTNSLAT IDVAGAFIGI  2160
SSHSAVLSGI LMFVITYASP SLSYLSMVMY IDMKDITFIS STHEYEWSIF LEKMIALPCL  2220
LPLLFNSLVL TSFTIILLLM RNHLFVWSVF SPKYLYVCAA TVCVYIGVFI VAATGLYTYS  2280
VFCFRTRNPQ EKCPQVLRDN VISHSQTNAH IISAFENSTY PVQEMCLESG CSKVKLETIM  2340
RRREVGNSES HPIVDQEHTK PLDNHQYRHR RRSGDITWIK ISDHSWWPSQ VVDEESVANK  2400
PKKKAKDEVR KRENISTREL LKKTLEQDIS KMKSAGKSKR KLREPKDNDA AKASNHKKQK  2460
QDSRGGNQEE TVSASPVITS GKSEAKKVYT RSEALRQREA KLEVTRESTK MENAKPEPRK  2520
ENIMNQCTRR EQNATKLSRK ASVKNISGQD GLRRSSRINA KEQTSERVAS ETSPPGDAGG  2580
RQDKMGKANE TKKAQNGMAG HNNQKRVGFG HPESEVSEEE IRAMVRDVIF RERTSKQSVN  2640
GKPNAKEEIG NGASEVGNAK GEGFGKKERE HAEKQVNIVS SAETLTGLVR KEGPEVGTVK  2700
KDSFRKQKIE DAEDRVTKKI VAKTSREKEV KQLDTEEKES NNATNCTLRT KMFDKDNSTT  2760
LKPNEIKEQE TAKGRDKASK HESRRQGNAG IPTVTEDVGE ACKAKKIGKV DPNKSKQLDF  2820
NGQVVENGSC RASKYKGSGE KETRKQGEAK SGACQGKPFN QNDSKQKENS NIKMHQSTVT  2880
TTPIKHAVTE ERGHLSARQL RVMQRLGLVA PPEMLRRWKW TAEIRSRRTR DRPHRINGHL  2940
ATLRSLLPSA TRMDKAALLG EVVRHVRELR EKVDDVAVGV VVPGEGDEIG VDQVGGPGDD  3000
EGKRVRAWVC CADRPGLMGD LNRAVGSVRA KAVRAEMATV GGRTRSVLEV EMLGVAGGAG  3060
PVRSALQMAL RSVLLNRDAG PVEIYKRPRL SSRFSKA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wde_A	9e-54	109	426	4	330	Kinesin-like protein KIFC3

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1007	1011	KRRRI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G25710.1	1e-18	basic helix-loop-helix 32

Link Out ? help Back to Top
Phytozome	Aco001282.1