PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco001352.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family WRKY
Protein Properties Length: 448aa    MW: 50328.7 Da    PI: 5.0054
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco001352.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.11.2e-30271330159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  Aco001352.1 271 MNDGCQWRKYGQKVAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILITTYEGTHNHP 330
                  58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-32256332IPR003657WRKY domain
SuperFamilySSF1182901.7E-27265332IPR003657WRKY domain
PROSITE profilePS5081128.621266332IPR003657WRKY domain
SMARTSM007748.9E-38271331IPR003657WRKY domain
PfamPF031063.8E-27272330IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MSTKKKKGEK IKIMQVDLSL KMEEEQKRRG DDEHHEEEEE EEEIKADEND EGSDDDDHNV  60
VEEDGEKRED ENNKEGDKET KREVGQDAKQ EKPMVDNIVS NELCMLQTEM DRMKEENELL  120
RKAVDRTMKD YYDLQMKFAA VQKADHHQQR EPRVFLSLGG DDNREPKRAR ETIEGDHQEQ  180
AKPLLLSNYR GGDTKEAKEL GLSLSLQTFE EPHEKDSSMK ELASSWLTLE SNKLQAAATA  240
AELAGITSQS INPANRKTRV SVRARCQGPT MNDGCQWRKY GQKVAKGNPC PRAYYRCTVA  300
PGCPVRKQVQ RCLEDMSILI TTYEGTHNHP LPVGATAMAS TTSAGPNYML MSGANSSSTS  360
NIIPESFSNQ IHSSYLSPYL LNSSPNLPTL NSFASSPSTS GIFDMSTNFQ THNMKYQWPA  420
NNPFSSNKDE ESSKSSSKWV IDSLSPQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-22258334176WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020083305.10.0probable WRKY transcription factor 9
TrEMBLA0A199W7V10.0A0A199W7V1_ANACO; Putative WRKY transcription factor 9
STRINGGSMUA_Achr10P30080_0011e-114(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80223446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.11e-64WRKY DNA-binding protein 9