PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco001390.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C2H2
Protein Properties Length: 381aa    MW: 41301.1 Da    PI: 9.9597
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco001390.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00057159182123
                  EEETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                  + C+ Cg++ + +++L+ H+ t H
  Aco001390.1 159 FACSACGEVLTKPHLLELHQATkH 182
                  78******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.787159187IPR007087Zinc finger, C2H2
PROSITE patternPS000280161182IPR007087Zinc finger, C2H2
SuperFamilySSF563994.6E-7184337No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MASGARTSLL DIFLLLFFLL SLHLGCCFSP SRSQDDPDPQ HARPKRRKIS PLSPSPPASD  60
PDSDSDSGDA RPDRNGGLGL GLSLTSVRSY LRRFFSVPKR GGREDIRSPP VDLSPCPCPC  120
PRIAADKSPS SGSAGISAAD CPCPPGTKHT SFASRADVFA CSACGEVLTK PHLLELHQAT  180
KHSLSELSDA DSGKNIVRII FLSGWKGRAP PTVRRILKVH NTQRTLARFE EYRDLVRSRA  240
ARRGGGAEFE RCIADGNERL RFYCSTMLCS LGGGACGSPY CCTCGIVRHG FAGKQADLDG  300
IATHASSWGA HASLPDDLER EFAYLRARRA MLVCRVVARA RARTSNWKPR RRGRAGRSTR  360
WRRGTSSCWC SIPGLCCRAS *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6633182e-97KM663318.1 Ananas bracteatus clone 47654 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020108642.10.0LOW QUALITY PROTEIN: uncharacterized protein LOC109724280
TrEMBLA0A199VT080.0A0A199VT08_ANACO; Uncharacterized protein
STRINGXP_008800782.11e-109(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105173037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.12e-44C2H2 family protein