PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco001456.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

Dof

Protein Properties

Length: 137aa MW: 14596.3 Da PI: 10.0889

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco001456.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.5	6.1e-38	78	131	2	55
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggr 55 +e+alkcprCds+ntkfCyynnysl+qPr+fCk+CrryWt+GGalrnvPvGgg Aco001456.1 78 PEQALKCPRCDSANTKFCYYNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGX 131 7899************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-32	62	130	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.0E-32	80	131	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.838	82	136	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	84	120	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 137 aa Download sequence Send to blast
MVFPSIPVYL DPPNWNQQLQ AHHIQPGSSA IGGGGNGPPP PLPLGAAAAP RPEAQPMSGA 60 SRPGSMSERA RLAKVPQPEQ ALKCPRCDSA NTKFCYYNNY SLTQPRHFCK TCRRYWTRGG 120 ALRNVPVGGG XSPSQP*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. {ECO:0000269\|PubMed:12887587}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin and salicylic acid (SA). Repressed by jasmonic acid (JA). {ECO:0000269\|PubMed:10758484, ECO:0000269\|PubMed:12887587}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK068542	4e-59	AK068542.1 Oryza sativa Japonica Group cDNA clone:J013155H18, full insert sequence.
GenBank	AP004303	4e-59	AP004303.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0407H12.
GenBank	AP014963	4e-59	AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010937643.1	3e-62	dof zinc finger protein DOF5.1 isoform X1
Swissprot	Q9M2U1	8e-44	DOF36_ARATH; Dof zinc finger protein DOF3.6
TrEMBL	A0A1D1ZK93	2e-55	A0A1D1ZK93_9ARAE; Dof zinc finger protein DOF3.6 (Fragment)
TrEMBL	A0A2H3X7L1	4e-55	A0A2H3X7L1_PHODC; dof zinc finger protein DOF3.6-like isoform X1
TrEMBL	A0A2H3X7N2	4e-55	A0A2H3X7N2_PHODC; dof zinc finger protein DOF5.1-like isoform X2
STRING	XP_008779546.1	7e-56	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.1	6e-44	OBF-binding protein 3

Link Out ? help Back to Top
Phytozome	Aco001456.1