PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco001552.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

MYB_related

Protein Properties

Length: 1592aa MW: 172546 Da PI: 5.958

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco001552.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.2	1.1e-09	828	868	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT +E +++a +G++ +++I++++g +R+++qck ++ Aco001552.1 828 DWTDDEKSVFIRALSTYGKD-FARISQCVG-TRSREQCKIFFS 868 6***************99.*****.******8775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.05E-13	632	695	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.1E-5	641	693	IPR009057	Homeodomain-like
PROSITE profile	PS51293	13.869	645	696	IPR017884	SANT domain
SMART	SM00717	3.7E-8	646	694	IPR001005	SANT/Myb domain
PROSITE profile	PS51293	14.173	824	875	IPR017884	SANT domain
SMART	SM00717	1.3E-8	825	873	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.8E-5	828	869	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.23E-10	828	876	IPR009057	Homeodomain-like
Pfam	PF00249	2.8E-8	828	867	IPR001005	SANT/Myb domain
CDD	cd00167	3.07E-7	829	867	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1592 aa Download sequence Send to blast
MPPEPLPWDR KDFVSKERKH DRGAGSDALG GGGASSTPWW REPYHGPRPF FRASPRRPPS 60 GHYRQGGGYH QFYPEDPASH GCTPSVAVPI SSPTSHQPPL KDHQNDKNNA GGVDDGSGTG 120 QRSDRDHPLG SISWKPLKWP RSSSLSSAKS GRSEPEEGKL EVSVPSGQET PIRSPVTSPQ 180 PSDEGAARKK PRLGWGQGLA KYERQKVQGS IDLTSPSAAG GAGCSSPATP SSATCSSSPA 240 LTDDKICTKA VNSENETNNQ SASGLGFQHC SGESLIKLDY LDNPIGSLTS ILADLLGPED 300 ACSGDSTSTR LVAVNKLFQL KGDVSKELEK TESEIDLLES VLKTVDSTAE NDCHLPSNLP 360 ASNALESCLG ASDGVSENSK DVEMGKLEAV PSALMHFKES DIKDVQTEPA ECPLRLKDDT 420 LEATSICDDG KKHSTEDVSS RDYAIIACSH GRTSCNLISL ITASNQDSER RALDVFNKTL 480 PTNQSKTDIW ESSDLSRHRK NDLKVKEKIA VRKRILKFKE QALSLKFRAF HHLWKEDLRL 540 LSVRKSRTKS NKRVDISNYS SHSGSQKQRS SIRSRFALPG NVTLVPTTEI VEFTSKLLSD 600 SQTKLCRSYL KMPALILDNE EKKHAKFITY NGIIEDPISL EKEKAKVNPW SQEEKDIFME 660 KLAAFGKDFG RISSFLTHKT TADCVEFYYK NHKSESFSEV KKLLDLRKQQ QCLPTSTYLL 720 TSDKRWNPGA NAASLDMLEA ASFVAEHTQS VKEMSGNERE SIAAGVLAGI CGAISSEAMS 780 SCITTTISPS EKIKYVANDR QLATEVTQNL DEEDTCSDEN CGEVASVDWT DDEKSVFIRA 840 LSTYGKDFAR ISQCVGTRSR EQCKIFFSKA RKCLGLDAVL QGNDNVGILP TSDTNGGRSD 900 TDDICAAEID SAICSTQSCS KVDGDVSQSV ANGNSEGLAH AGADRSSENE VAGGINLENE 960 SKIGRNLEEN ESKVERNFEE NESEVGINLE ENESKVGINL EENESKVGIN LEENESKVGI 1020 NLEENERKVE INLEENGSKV DKQQCVVHDV KVENEEVKEE SYTTPKNSVA ALSCKEPVEP 1080 EVAENIDTEK KKVEGGVIPP SEAFVTAGLE GKLNSQTACV IQQKDATGVL SSNGLRKEVN 1140 LHQPLAPEVG SNRRRRASID LGTSSSYTLC FGSDPSANEN NLYLENSFGV CSRLTTISTN 1200 NLHQLPLELR TCLPKKTQGI TLKQENCQSV QSSAVFSNPS SICFDGTHPS QIILNSDEHT 1260 NKRHQCSAAR DLYQQYVLKN PSLNQVDQPL QVLKGYPLQI FNQNEVKRES VPSVSGNPFL 1320 LESHSRRNGA SQSNPFFVWN AQKDKCNGSS VSHSSSATLT PSKIDDKSEV QQSQLTGDIK 1380 LFGKILSQPS SQKSTSSPPE NKSRPLSPAT NGSSALAKPS NIVNDGAPHS SVPGSSSKTG 1440 LEELPVRSYG FWDGNRIQTG FSSLSESALM LAKYQGSLAG VSLYKDGAPG GNAIIKDYHP 1500 SFLQHLSSDG KRVENFTELQ KRGAGIEPMS GFKQSGRAVV RLGAANIVGP AGILADGAVS 1560 DPVAALKMLY PSSGQVIGAE MKSWTGDIGG R*

Sequence ? help Back to Top

Protein Sequence Length: 1592 aa Download sequence Send to blast

MPPEPLPWDR KDFVSKERKH DRGAGSDALG GGGASSTPWW REPYHGPRPF FRASPRRPPS  60
GHYRQGGGYH QFYPEDPASH GCTPSVAVPI SSPTSHQPPL KDHQNDKNNA GGVDDGSGTG  120
QRSDRDHPLG SISWKPLKWP RSSSLSSAKS GRSEPEEGKL EVSVPSGQET PIRSPVTSPQ  180
PSDEGAARKK PRLGWGQGLA KYERQKVQGS IDLTSPSAAG GAGCSSPATP SSATCSSSPA  240
LTDDKICTKA VNSENETNNQ SASGLGFQHC SGESLIKLDY LDNPIGSLTS ILADLLGPED  300
ACSGDSTSTR LVAVNKLFQL KGDVSKELEK TESEIDLLES VLKTVDSTAE NDCHLPSNLP  360
ASNALESCLG ASDGVSENSK DVEMGKLEAV PSALMHFKES DIKDVQTEPA ECPLRLKDDT  420
LEATSICDDG KKHSTEDVSS RDYAIIACSH GRTSCNLISL ITASNQDSER RALDVFNKTL  480
PTNQSKTDIW ESSDLSRHRK NDLKVKEKIA VRKRILKFKE QALSLKFRAF HHLWKEDLRL  540
LSVRKSRTKS NKRVDISNYS SHSGSQKQRS SIRSRFALPG NVTLVPTTEI VEFTSKLLSD  600
SQTKLCRSYL KMPALILDNE EKKHAKFITY NGIIEDPISL EKEKAKVNPW SQEEKDIFME  660
KLAAFGKDFG RISSFLTHKT TADCVEFYYK NHKSESFSEV KKLLDLRKQQ QCLPTSTYLL  720
TSDKRWNPGA NAASLDMLEA ASFVAEHTQS VKEMSGNERE SIAAGVLAGI CGAISSEAMS  780
SCITTTISPS EKIKYVANDR QLATEVTQNL DEEDTCSDEN CGEVASVDWT DDEKSVFIRA  840
LSTYGKDFAR ISQCVGTRSR EQCKIFFSKA RKCLGLDAVL QGNDNVGILP TSDTNGGRSD  900
TDDICAAEID SAICSTQSCS KVDGDVSQSV ANGNSEGLAH AGADRSSENE VAGGINLENE  960
SKIGRNLEEN ESKVERNFEE NESEVGINLE ENESKVGINL EENESKVGIN LEENESKVGI  1020
NLEENERKVE INLEENGSKV DKQQCVVHDV KVENEEVKEE SYTTPKNSVA ALSCKEPVEP  1080
EVAENIDTEK KKVEGGVIPP SEAFVTAGLE GKLNSQTACV IQQKDATGVL SSNGLRKEVN  1140
LHQPLAPEVG SNRRRRASID LGTSSSYTLC FGSDPSANEN NLYLENSFGV CSRLTTISTN  1200
NLHQLPLELR TCLPKKTQGI TLKQENCQSV QSSAVFSNPS SICFDGTHPS QIILNSDEHT  1260
NKRHQCSAAR DLYQQYVLKN PSLNQVDQPL QVLKGYPLQI FNQNEVKRES VPSVSGNPFL  1320
LESHSRRNGA SQSNPFFVWN AQKDKCNGSS VSHSSSATLT PSKIDDKSEV QQSQLTGDIK  1380
LFGKILSQPS SQKSTSSPPE NKSRPLSPAT NGSSALAKPS NIVNDGAPHS SVPGSSSKTG  1440
LEELPVRSYG FWDGNRIQTG FSSLSESALM LAKYQGSLAG VSLYKDGAPG GNAIIKDYHP  1500
SFLQHLSSDG KRVENFTELQ KRGAGIEPMS GFKQSGRAVV RLGAANIVGP AGILADGAVS  1560
DPVAALKMLY PSSGQVIGAE MKSWTGDIGG R*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	1e-16	607	697	4	93	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	1e-16	607	697	4	93	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020108787.1	0.0	uncharacterized protein LOC109724385 isoform X2
TrEMBL	A0A199VBA0	0.0	A0A199VBA0_ANACO; Nuclear receptor corepressor 2
STRING	XP_008789086.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6299	35	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-100	MYB family protein

Link Out ? help Back to Top
Phytozome	Aco001552.1