PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco001636.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

bZIP

Protein Properties

Length: 406aa MW: 43533.6 Da PI: 6.8008

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco001636.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.5	7.8e-10	208	255	5	52
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l Aco001636.1 208 KRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLF 255 9****************************************9888765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.1E-15	204	268	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.645	206	269	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.8E-8	208	262	No hit	No description
SuperFamily	SSF57959	8.44E-11	208	259	No hit	No description
Pfam	PF00170	1.2E-8	208	254	IPR004827	Basic-leucine zipper domain
CDD	cd14703	4.52E-24	209	258	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence Send to blast
MQPHPTDPPQ PPSRNPNPNH NPSLPFPFPH NAPAPLPTVA PGAPGMFHSL NPAHCAPMRG 60 SSHRRARSEL PFRIPGDLDL SSGDPMSTGS LEEMGSEDDL FCTFMDIEKI GGKLEGSGSG 120 SEGGVCRDRT AESSGRAEDQ TPGNAAAAGA AGAAAPSRPK HRHSSSIDGA SMMSSATTRA 180 EGVFGDVMEA KKAMTADQLA ELAAIDPKRA KRILANRQSA ARSKERKARY ISELERKVQT 240 LQTEATTLSA QLTLFQRDTT GLSAENAELK LRLQAMEQQA QLRDALNEAL KHEVERLKIA 300 TGEITSLGET YNMGLQHISY NNPSFFTLAQ PQPVQHQGVH LQPQFNQSHS NNSPNHQMLP 360 HPNTLPDIMQ QDPLGRLQGL EISKGSLVVK SESPSISASE SSSTF*

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence Send to blast

MQPHPTDPPQ PPSRNPNPNH NPSLPFPFPH NAPAPLPTVA PGAPGMFHSL NPAHCAPMRG  60
SSHRRARSEL PFRIPGDLDL SSGDPMSTGS LEEMGSEDDL FCTFMDIEKI GGKLEGSGSG  120
SEGGVCRDRT AESSGRAEDQ TPGNAAAAGA AGAAAPSRPK HRHSSSIDGA SMMSSATTRA  180
EGVFGDVMEA KKAMTADQLA ELAAIDPKRA KRILANRQSA ARSKERKARY ISELERKVQT  240
LQTEATTLSA QLTLFQRDTT GLSAENAELK LRLQAMEQQA QLRDALNEAL KHEVERLKIA  300
TGEITSLGET YNMGLQHISY NNPSFFTLAQ PQPVQHQGVH LQPQFNQSHS NNSPNHQMLP  360
HPNTLPDIMQ QDPLGRLQGL EISKGSLVVK SESPSISASE SSSTF*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:14704272}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00303	DAP	Transfer from AT2G40620	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM662055	1e-149	KM662055.1 Ananas bracteatus clone 45339a microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020107653.1	0.0	transcription factor RF2b
Swissprot	Q6S4P4	1e-133	RF2B_ORYSJ; Transcription factor RF2b
TrEMBL	A0A199VRX7	0.0	A0A199VRX7_ANACO; Transcription factor RF2b
STRING	XP_008782655.1	1e-173	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2683	36	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	6e-82	bZIP family protein

Link Out ? help Back to Top
Phytozome	Aco001636.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064]