PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco001637.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family B3
Protein Properties Length: 919aa    MW: 100911 Da    PI: 7.668
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco001637.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.82.4e-19340439198
                  EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                  f+kvl+ sd+++ grlvlpk +ae++   ++++e++ lt++d +g++W ++++y  +++s++yvl+ G     ++ +L++gD+v+F++++  e++lv+
  Aco001637.1 340 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGRPLTIQDAKGKEWHFQFRYwpNNNSRMYVLE-GVTPCIQSLQLQAGDTVTFSRIE-PEGKLVM 435
                  99**************************555567778*****************89999999***9.********************987.7777777 PP

                  EEE- CS
           B3  95 kvfr 98 
                  ++++
  Aco001637.1 436 GFRK 439
                  7766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-31333444IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-21337439IPR015300DNA-binding pseudobarrel domain
CDDcd100174.11E-24338439No hitNo description
PROSITE profilePS5086311.758340441IPR003340B3 DNA binding domain
SMARTSM010192.1E-22340440IPR003340B3 DNA binding domain
PfamPF023621.3E-16340439IPR003340B3 DNA binding domain
PROSITE profilePS5105014.569601651IPR011124Zinc finger, CW-type
PfamPF074962.1E-12606648IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 919 aa     Download sequence    Send to blast
MAAAAAQRCM NAVCGAAAPP QGGEWRKGWP LRSGGYAALC DKCGMAYEQL VFCDIFHQKE  60
SGWRECAFCG KRLHCGCIAS KFSFDLLDTG GVHCISCMKN SGLSLIPSKI MPKFMPPHEY  120
QRLFGLYPRN LKDESVPGSS FSADDKLDDT AKKNFEAGQS SMILKPREIE NGTGPIKWEH  180
INPFLRRSQN SIGSSQSTQQ DDSKDTDNVA CESLTKACLS MSLGISNSGS KFETTLNIER  240
NIMLPPPSAI AEGSDLSKKL SPFQQVERGR HFLHKPPKTG PGLGVACDNT AKDVVPLRVA  300
RPPIEGRGRN QLLPRYWPRI TDQELQQISG DANSTIVPLF EKVLSASDAG RIGRLVLPKA  360
CAEAYFPPIS QPEGRPLTIQ DAKGKEWHFQ FRYWPNNNSR MYVLEGVTPC IQSLQLQAGD  420
TVTFSRIEPE GKLVMGFRKA TNTVTLQDSQ ISAIANGSFV SDTFFSGANE NFPIVSGFSG  480
LLQSVKGTAD FHSGSLSERL SSADGDASWL KAEMFGGRPN EDLSFQPLQK RSRNIGAKSR  540
RLLMDNLDAL ELKLTWEEAQ DLLRPAPSAK PTVVTIEDHD IEEYEEPPVF GKRTIFTVRA  600
SGEQDQWIQC DDCSKWRKIP VHVIVASKWT CADNSWDPKS SSCSAPDELN PKELQNILRQ  660
YADLKRQRLS GSFKPTNSSD LDTPGLDTLA TAATLGEVGN QSGATTCAAP TTRHPRHRPG  720
CSCIVCIQPP SGKGPKHNPA CTCNVCMTVK RRFKTLMMRK KKRQSEREEA EANTSNKKIG  780
WSNKEEFEGS NPFRVESDLG ADYSRSIIEK LEASKGRIDL NCHPGRSEDQ QVGQSRPPSM  840
MSLLQVANRP LENYLKQNGL TSLVCEQASS STLTVPQATG ESEGRTSNEG HRASVDREQD  900
SVVDEGCGNQ DKVVVDAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A1e-663184472131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1749760KRRFKTLMMRKK
2749762KRRFKTLMMRKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6643071e-155KM664307.1 Ananas bracteatus clone 49093c microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020108838.10.0B3 domain-containing protein Os07g0679700-like isoform X1
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A199VSB60.0A0A199VSB6_ANACO; B3 domain-containing protein
STRINGSi028834m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP65193748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]