PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco001643.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family WRKY
Protein Properties Length: 327aa    MW: 34473.3 Da    PI: 4.9804
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco001643.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY77.71.3e-24129189259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                  +Dg +WrKYGqKe+++ + p+sY+rCt++   gC+++k+v+rs++dp++ +itY geH+++
  Aco001643.1 129 EDGQTWRKYGQKEIQNCTQPKSYFRCTHKndqGCMARKQVQRSEDDPTTYIITYMGEHTCR 189
                  79**************************99999*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-26118191IPR003657WRKY domain
PROSITE profilePS5081122.63123191IPR003657WRKY domain
SuperFamilySSF1182901.44E-24126191IPR003657WRKY domain
SMARTSM007741.6E-33128190IPR003657WRKY domain
PfamPF031065.0E-24129189IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MRSSSSSHGD AATVMVMATA MAMRAMERGR ELRSLLMASR PGDSAAEALV DEVLGSIAAA  60
IAALGSGDGA AAEYAGGGGG GSVCSGDGRS EVSTGKRKGS PGIGNDRRRV CRRRSENSPR  120
REVMAKTQED GQTWRKYGQK EIQNCTQPKS YFRCTHKNDQ GCMARKQVQR SEDDPTTYII  180
TYMGEHTCRD PSTIPQILEP PLPGDSYLIS FKSDHATELP KSEAAAAAAA AAVKPSSSSF  240
KQDCDEDVLS SITPAASSQA ECSLLPDQLA AIVGDCSGNP FEGLAIALNE GDVTSGVHSS  300
LDYMMDAGAF GIEDFNFHFD HDGFPP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A7e-29123189369OsWRKY45
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6654790.0KM665479.1 Ananas bracteatus clone 50627d microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020107963.10.0probable WRKY transcription factor 70
TrEMBLA0A199VSS90.0A0A199VSS9_ANACO; Putative WRKY transcription factor 70
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76563549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.15e-22WRKY DNA-binding protein 70