PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco001674.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

NAC

Protein Properties

Length: 336aa MW: 37486.1 Da PI: 7.3202

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco001674.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	174.3	3.5e-54	7	133	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdeel+++yL +k+ ++ ++ +i evd++k+ePw+L +k+k + ke+yfF ++d+ky+tg+r+nrat+sgyWkatgkdke+++ +++ Aco001674.1 7 LPPGFRFHPTDEELITHYLSPKIGNHGFTS-WAIGEVDLNKCEPWTLSSKAKMGGKELYFFYHKDRKYPTGTRTNRATESGYWKATGKDKEIYR-GKN 102 79***********************998.77**********98999999************************************.99 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrle 129 lvg+kktLvfy grapkgekt+Wvmheyrle Aco001674.1 103 LVGMKKTLVFYLGRAPKGEKTNWVMHEYRLE 133 *****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.31E-61	4	156	IPR003441	NAC domain
PROSITE profile	PS51005	56.542	7	156	IPR003441	NAC domain
Pfam	PF02365	2.1E-28	8	132	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MDQSTQLPPG FRFHPTDEEL ITHYLSPKIG NHGFTSWAIG EVDLNKCEPW TLSSKAKMGG 60 KELYFFYHKD RKYPTGTRTN RATESGYWKA TGKDKEIYRG KNLVGMKKTL VFYLGRAPKG 120 EKTNWVMHEY RLEGKLPPHI HRSSKDEWVV CRVFDKSLSV KTTPPNPGLG RINEPFGNYD 180 LLDSATLPPL IDPSYNGSGY VDCVSDGALG IDEIDSGISV PNQYLNQNEP DDLMFYPTMP 240 PPGSYFVPSA PTNVARYLHR HEEAEMVRAL AAANDTSAAA IRRHCKAEQQ SRQSATSVTA 300 ASADRNPKIA PVFSTTTTPY GDLDDPPPFD GMWKY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	5e-52	7	161	20	173	NAC domain-containing protein 19
3swm_B	5e-52	7	161	20	173	NAC domain-containing protein 19
3swm_C	5e-52	7	161	20	173	NAC domain-containing protein 19
3swm_D	5e-52	7	161	20	173	NAC domain-containing protein 19
3swp_A	5e-52	7	161	20	173	NAC domain-containing protein 19
3swp_B	5e-52	7	161	20	173	NAC domain-containing protein 19
3swp_C	5e-52	7	161	20	173	NAC domain-containing protein 19
3swp_D	5e-52	7	161	20	173	NAC domain-containing protein 19
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Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808, ECO:0000269\|PubMed:18305205, ECO:0000305\|PubMed:15723790}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020107823.1	0.0	NAC domain-containing protein 92-like
Swissprot	Q9FLR3	1e-83	NAC79_ARATH; NAC domain-containing protein 79
TrEMBL	A0A199V7G1	0.0	A0A199V7G1_ANACO; NAC domain-containing protein 100
STRING	XP_008782760.1	1e-113	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1862	38	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.2	8e-86	Arabidopsis NAC domain containing protein 87

Link Out ? help Back to Top
Phytozome	Aco001674.1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Vidal EA,Álvarez JM,Gutiérrez RA Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function. Plant Signal Behav, 2014. 9(3): p. e28501 [PMID:24642706] Lee MH,Jeon HS,Kim HG,Park OK An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164. New Phytol., 2017. 214(1): p. 343-360 [PMID:28032643]