PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco001737.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bZIP
Protein Properties Length: 471aa    MW: 51269.3 Da    PI: 7.7197
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco001737.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.12.1e-09180220343
                  XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 
                  + k  rr+++NReAAr+sR+RKka++++Le+   +L +  +
  Aco001737.1 180 DQKTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLNQLEQ 220
                  568899************************96655555444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1708.7E-8172224No hitNo description
SMARTSM003382.8E-6178241IPR004827Basic-leucine zipper domain
PfamPF077163.4E-6178224IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.393180224IPR004827Basic-leucine zipper domain
CDDcd147081.49E-22182234No hitNo description
SuperFamilySSF579591.69E-6182224No hitNo description
PROSITE patternPS000360185200IPR004827Basic-leucine zipper domain
PfamPF141446.5E-33264339IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MGSRRGGIGV EDGKGVVGGM PSFSSTLPGA QTAGTEGNKN HPASISEFGT ILQSTGFRSD  60
DAGELGRCSA VNINSTGQTV TFDLAQFASL TKAVTSTGNT PSLGVDFATL PRDKGSHPKL  120
VSISSGHFEN WGESAMADAS PRTDTSTDVD TDERNRMFEQ GQTAALVPSD SSDRSKDKSD  180
QKTLRRLAQN REAARKSRLR KKAYVQQLEN SRLKLNQLEQ ELQRARQQGI FISSSGDHSH  240
STSGNGALVF NTEYGRWLED HNRQINELRT AVNAHASDTD LRAMVEGVMA HYDEIFRLKG  300
IAAKADVFHM LSGMWKTPAE RCFLWLGGFR SSELLKLLVT QLEPLTEQQV VGLCSLQQSS  360
QQAEDALSQG MEALQQSLAE TLAGSLGPSG SSGNVANYMG QMAMAMGKLG TLENFLRQAD  420
NLRQQTLQQM QRILTIRQSA RALLAIHDYF SRLRALSSLW LARPRDLEPN *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020108426.10.0transcription factor TGA2.2-like isoform X5
SwissprotQ6IVC20.0TGAL1_ORYSJ; Transcription factor TGAL1
TrEMBLA0A1U7ZC940.0A0A1U7ZC94_NELNU; transcription factor TGA2.2-like isoform X2
STRINGXP_010247478.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48638185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-142TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]