PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco001815.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C3H
Protein Properties Length: 301aa    MW: 32367.4 Da    PI: 6.8531
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco001815.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH322.1e-10232257227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  ktelC+ + + G C+y +rC+FaHg+
  Aco001815.1 232 KTELCNKWGEPGGCPYAARCRFAHGM 257
                  9***********************95 PP
2zf-CCCH17.76.3e-06269293125
                  --S---SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                  ykt lCr    +G+C+yG rC+F H
  Aco001815.1 269 YKTQLCRMLGNGGECPYGHRCHFRH 293
                  9******9999************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.44E-8230262IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.272230258IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-5230257IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-15230263IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-7232257IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-8264296IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-11264293IPR000571Zinc finger, CCCH-type
SMARTSM003560.046268295IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.685268296IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MEGEITPVLL RAAIDDESPI SCCLFEGGGA TAGSSSSKAA AARDRFEEEK DRILRDLQQM  60
INRYNECFHR LRRASADVDA LRRENLDLVA EKLHLTFLVD DREASAAAAA AAAGAKRKET  120
KKSAIGGDDP DPGASDGGER NGATRGGIPK SISIRSRGFL ATAAAAAAAV GGRGGGGEAS  180
WRPQRLRVPA VLPRDVRKPL ISATFMAQEG GEEAEGEEEE VEVEVYSQGM EKTELCNKWG  240
EPGGCPYAAR CRFAHGMEEL RPVLRHPRYK TQLCRMLGNG GECPYGHRCH FRHALPNPQP  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A3e-20232293566Butyrate response factor 2
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170176GGRGGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020107803.11e-159zinc finger CCCH domain-containing protein 15-like isoform X3
TrEMBLA0A199W4841e-168A0A199W484_ANACO; Zinc finger CCCH domain-containing protein 14
STRINGXP_008795538.12e-75(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121433235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.22e-38C3H family protein