PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco001817.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family ARR-B
Protein Properties Length: 659aa    MW: 73861.2 Da    PI: 6.4204
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco001817.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like42.81.2e-132632912755
      G2-like  27 AtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  ++Pk+ile m+v+gLt++hv+SHLQkYR 
  Aco001817.1 263 TVPKKILEKMNVPGLTRNHVASHLQKYRK 291
                  79**************************6 PP
2Response_reg55.14.3e-19271361110
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vd + + re+ +++l + +  +v+++++g+eal++l++++  +D++l D+ +p+m+G+e++++  +e  +lp+iv+ a+g+ e ++   +  + 
   Aco001817.1  27 VLLVDGDAISREITEKILLECNN-QVTTCSTGTEALAMLQDRKgvFDVVLSDVGLPDMNGYEFVRRVDSEL-QLPVIVMIAEGNTEFMTMISNDEVW 121
                   89*****************8888.9**************999999**********************8865.9************************ PP

                   EEEESS--HHHHHHH CS
  Response_reg  96 dflsKpfdpeelvka 110
                   ++l+Kp+ ++++++a
   Aco001817.1 122 GILAKPVTKDAVMNA 136
                   ********9999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.71E-2623147IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23009.6E-2824147No hitNo description
SMARTSM004486.9E-1625137IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011030.36226141IPR001789Signal transduction response regulator, receiver domain
PfamPF000726.3E-1627136IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.17E-1928141No hitNo description
Gene3DG3DSA:1.10.10.603.4E-21214295IPR009057Homeodomain-like
SuperFamilySSF466893.94E-10216294IPR009057Homeodomain-like
TIGRFAMsTIGR015576.0E-12254291IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 659 aa     Download sequence    Send to blast
MDRGKAPAYS PISGEGCSAV LPERCRVLLV DGDAISREIT EKILLECNNQ VTTCSTGTEA  60
LAMLQDRKGV FDVVLSDVGL PDMNGYEFVR RVDSELQLPV IVMIAEGNTE FMTMISNDEV  120
WGILAKPVTK DAVMNAWKHM ADRKQNEVNR SGTSQPIIAG DRKPSTSERN PNLHQNPNPS  180
QNDTTQTKFR WKNREELSER GESSRAAAVA ATGAEKKPRL VWYPALQNLF IKAVNELGAE  240
GESFAPLSSY QIMNAMQFLF YLTVPKKILE KMNVPGLTRN HVASHLQKYR KQLKESQDQK  300
RPDANSTAAS GLHSCNVLSQ NLPSISTNQN SVRSQVTNTQ ISNSNAQITN VSNISCSSRQ  360
PIFSNQSFYH PGNFNNLHFM QLEQPHCKHP SQNPVLRLEG SAVNNSQNPQ QAVLPWHNIS  420
GQSEAQVAPF AYLDYSMQLQ QQQQRQQQQQ QQQRQQRQQR MFFGSQQNHP QLYMHPARQF  480
TGEFTANNLS ALPMMENNIT PNNTWNHIAG GDRTNLNTDR SMVVGAPQLF HANNNQYAVE  540
LPAGCFSLSS NIEGFARRDS QTMADHFGET SNMTGLLSRE LMNDDFYNHP SSLSHADYSV  600
YMPTNQEENW SVSSDFDTKD NSSGIINPYL FRAHNFEDVV DGVDSLMNEM QNDCTNKV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020107868.10.0putative uncharacterized protein DDB_G0282129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-41response regulator 2