PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco001948.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

FAR1

Protein Properties

Length: 305aa MW: 34057.4 Da PI: 9.5128

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco001948.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.6	2.7e-20	60	154	1	86
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 kfYn+YA ++GFs+rk++++k k+++ it+ t++Csk g++++++++ t++ ++ ++ rt+Cka++++k +++gkw++t + l Hn Aco001948.1 60 KFYNDYAFKMGFSIRKQTHYKArKQDDAITSITYCCSKAGNSKPTSQEkseqqnsqgTHTPQKDFPNRRTNCKAHIVLKIDDRGKWVIT-IPLTHN 154 6*****************99678899**********9999887777777766666678899*****************886.566666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.9E-18	60	154	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MEHGSIIGSS VSMSNLDVRD EVNEEIGKIV ANDHTSNVSK YPVDEIRVGL EFTCIEDAKK 60 FYNDYAFKMG FSIRKQTHYK ARKQDDAITS ITYCCSKAGN SKPTSQEKSE QQNSQGTHTP 120 QKDFPNRRTN CKAHIVLKID DRGKWVITIP LTHNVKDEED PKGLSHPSKR KQGCQELASN 180 VGPLNSKRLL NPKEIAIIPT VQFLIQGPKS RKYQVLYTSD SIVALHLNYY NAIGSCSSYV 240 WSSQLDGHAL QQLIWSVRGA KPLPRSSTAS LGPGSKKWWS ENYKKFLVGS TADPADFFTR 300 SNQA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM662159	1e-36	KM662159.1 Ananas bracteatus clone 45604 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020108789.1	1e-101	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A199VVY7	2e-94	A0A199VVY7_ANACO; Protein FAR1-RELATED SEQUENCE 5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18960.1	2e-10	FAR1-related sequence 12

Link Out ? help Back to Top
Phytozome	Aco001948.1