PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco002066.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family NAC
Protein Properties Length: 440aa    MW: 47683.7 Da    PI: 4.509
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco002066.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM743.7e-23271523128
          NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekew.yfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                   Gf F Ptde+l+v+yL++ ++g++l   +++ e+++y+++P++L     +++ e+ yf +kr +   +g+r +r++ +g+W  + k++e++s++ge+
  Aco002066.1  27 LGFAFTPTDEQLIVHYLRAYAAGQSLCW-DHVVEAQVYSTDPRSLL----GDDGEIgYFLTKRTR---HGNRVKRTAGRGTWTGQTKKNEIVSAGGEV 116
                  7************************999.889*************6....344566477777666...589*************************** PP

          NAM 100 vglkktLvfy.......kgrapkgektdWvmheyrl 128
                  +g k ++ f        + ++p+ + t  vm ey+l
  Aco002066.1 117 IGFKAMFSFCigddddcSSKKPSKKTTGYVMYEYEL 152
                  **********998888778999999*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-2821175IPR003441NAC domain
PROSITE profilePS5100528.11325177IPR003441NAC domain
PfamPF023653.5E-1428152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MAQQCHPSSR GTAPRPSRSQ SEESVALGFA FTPTDEQLIV HYLRAYAAGQ SLCWDHVVEA  60
QVYSTDPRSL LGDDGEIGYF LTKRTRHGNR VKRTAGRGTW TGQTKKNEIV SAGGEVIGFK  120
AMFSFCIGDD DDCSSKKPSK KTTGYVMYEY ELPSTANQGT RQQGASQEPV LCCIKKSARE  180
IARSHKRKRE EAARTPAAET DIAASVRDVN NVNLVSDGLL GRTMAADQQQ PIPYHGKNVA  240
TGNADFFEVG ECSYSSTNTE YADSVASADG IKEREMANGD INLACHGALG MTADIDLLPI  300
PYLRKWTETM NADIFYGLRG DVNTGDIGSS TAMEGAGDRQ PPLLSYELNG TTAAAATADQ  360
QLLLAPDQDE RTVVDEAGDW DQLLSVLENE DYSDWFDSVL NDEPSPPPLI DSETPFRNCQ  420
MPPPASSDGA ASFCCDPRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-152117716168NAC domain-containing protein 19
3swm_B3e-152117716168NAC domain-containing protein 19
3swm_C3e-152117716168NAC domain-containing protein 19
3swm_D3e-152117716168NAC domain-containing protein 19
3swp_A3e-152117716168NAC domain-containing protein 19
3swp_B3e-152117716168NAC domain-containing protein 19
3swp_C3e-152117716168NAC domain-containing protein 19
3swp_D3e-152117716168NAC domain-containing protein 19
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52890.16e-15NAC domain containing protein 19