PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco002115.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family GRAS
Protein Properties Length: 525aa    MW: 56983.1 Da    PI: 6.4732
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco002115.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS336.64.5e-1031144903374
         GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal..ppsetseknsseelaalklfsevsPilkfshlta 98 
                   lLl+cAeav+++ l++a+ +L +++elasp g++ +R+aayf+ AL ar+++s  ++y+ l  + ++  ++++ + ++a+++++ +sP++kfsh+t 
  Aco002115.1 114 GLLLHCAEAVAADRLSEARDILPEINELASPFGSSPERVAAYFADALGARILSSYLGVYSPLihHHKPLVTSHHNRIFNAFQVYNSISPLVKFSHFTS 211
                  58**********************************************************9965555666667999999******************* PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl.....el 191
                  NqaI +a++geervHiiD+di+qGlQWp L+q LasRp +  slRiTg+gs    s e le+tg+rL++fA++lg+pfef+++ + ++ d        
  Aco002115.1 212 NQAIFQALDGEERVHIIDLDIMQGLQWPGLFQILASRPLKLRSLRITGLGS----SLELLEATGRRLSDFAAALGLPFEFQPV-EGKIGDQskaggGG 304
                  ***************************************************....9**************************7.44444441111122 PP

         GRAS 192 eeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvks.lsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpres.....ee 281
                   +++ +  +E+ +V++++  h l+d ++s e      ++++k+ ++P++v+vveq++ + +++Fl rf+eal+yysa+fd+l e  +++ s      e
  Aco002115.1 305 GAFAPRDgREVAVVHWMH--HCLYDVTGSDEA----AVSVIKNvIRPRLVTVVEQDLGRHGGDFLGRFVEALHYYSAVFDALgEGAAAEGSreeeeAE 396
                  344444466777777776..666666666666....7788876379************************************7766666556666689 PP

         GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpls.ekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  r+ vEr+llg ei+n+va  g +r+ +   +++W e +++aGF++v+l    aa+qa+lll +   ++gy++ ee g+l lgWkd +L+++SaW+
  Aco002115.1 397 RHDVERQLLGAEIRNIVAVGGPKRTGEVA-VGRWGEEMRRAGFEQVSLAgGPAAAQANLLLGMRLpWKGYTLVEEAGCLKLGWKDLSLLTASAWK 490
                  9**********************998887.9****************9625799********9998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.83286468IPR005202Transcription factor GRAS
PfamPF035141.6E-100114490IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MLQSLLPRSP ITNAASSDAP PMSRPKRSAD ARDLTPSSSS PAAAAAACDD DDDRLRKRKQ  60
LQLYPQPEPQ PPQQQQQQHV VDVIQERKND NTYFSAGSSS SSSAVESRVL RLLGLLLHCA  120
EAVAADRLSE ARDILPEINE LASPFGSSPE RVAAYFADAL GARILSSYLG VYSPLIHHHK  180
PLVTSHHNRI FNAFQVYNSI SPLVKFSHFT SNQAIFQALD GEERVHIIDL DIMQGLQWPG  240
LFQILASRPL KLRSLRITGL GSSLELLEAT GRRLSDFAAA LGLPFEFQPV EGKIGDQSKA  300
GGGGGAFAPR DGREVAVVHW MHHCLYDVTG SDEAAVSVIK NVIRPRLVTV VEQDLGRHGG  360
DFLGRFVEAL HYYSAVFDAL GEGAAAEGSR EEEEAERHDV ERQLLGAEIR NIVAVGGPKR  420
TGEVAVGRWG EEMRRAGFEQ VSLAGGPAAA QANLLLGMRL PWKGYTLVEE AGCLKLGWKD  480
LSLLTASAWK TGNSHGPAEG GEDRDHVQPP PQQQQHHHHS SLLT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-13811848925378Protein SCARECROW
5b3h_A1e-13811848924377Protein SCARECROW
5b3h_D1e-13811848924377Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15257DRLRKR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020085783.10.0scarecrow-like protein 23
SwissprotQ9FHZ11e-152SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A199UI800.0A0A199UI80_ANACO; Scarecrow-like protein 23
STRINGXP_008786112.10.0(Phoenix dactylifera)
STRINGXP_008799890.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137138122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-143GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]