PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco002298.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

NF-YB

Protein Properties

Length: 239aa MW: 24484.9 Da PI: 6.6019

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco002298.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	186.7	1.7e-58	32	127	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisfvt+easdkcqrekrktingddllwa++tlGfedyveplkvyl+k+re+ege+ Aco002298.1 32 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMSTLGFEDYVEPLKVYLHKFREIEGER 127 89********************************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	5.7E-55	28	145	IPR009072	Histone-fold
SuperFamily	SSF47113	3.73E-41	34	149	IPR009072	Histone-fold
Pfam	PF00808	9.4E-28	37	101	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	3.4E-21	65	83	No hit	No description
PROSITE pattern	PS00685	0	68	84	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	3.4E-21	84	102	No hit	No description
PRINTS	PR00615	3.4E-21	103	121	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MGMIYSDSDS GDEPNGINGG GGGGGGSASS AREQDRFLPI ANVSRIMKKA LPANAKISKD 60 AKETVQECVS EFISFVTGEA SDKCQREKRK TINGDDLLWA MSTLGFEDYV EPLKVYLHKF 120 REIEGERQGT ASASASASAA QSHQLSPNEA NVGGGYGGGG MFAGSGMMMM GQQHLYGSNP 180 GALYHQHHDH QFNHLMGMSM DHGKSTPRGS GGGGGGGGGF GGGSSGSSGS NIGRQGGV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	2e-51	26	122	1	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	209	223	SGGGGGGGGGFGGGS

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU956383	1e-109	EU956383.1 Zea mays clone 1561739 nuclear transcription factor Y subunit B-3 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020086983.1	1e-138	nuclear transcription factor Y subunit B-8-like
Swissprot	Q75IZ7	1e-70	NFYB8_ORYSJ; Nuclear transcription factor Y subunit B-8
TrEMBL	A0A199V1I0	1e-108	A0A199V1I0_ANACO; Nuclear transcription factor Y subunit B-3
STRING	MLOC_5897.1	3e-72	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP201	38	331

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	3e-68	nuclear factor Y, subunit B3

Link Out ? help Back to Top
Phytozome	Aco002298.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]