PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco002309.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family AP2
Protein Properties Length: 420aa    MW: 45052.5 Da    PI: 9.5438
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco002309.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.66.5e-1387143155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV++++++gr++A+++d  ++n+ ++k+   g ++ +e Aa+a++ a++k++g
  Aco002309.1  87 SIYRGVTRHRWTGRYEAHLWDkSTWNQsQNKKGKQGAYDDEEAAARAYDLAALKYWG 143
                  57*******************6666999885555599******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.0E-887143IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-1587153IPR016177DNA-binding domain
PROSITE profilePS5103218.41388151IPR001471AP2/ERF domain
SMARTSM003805.0E-1888157IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.4E-1288152IPR001471AP2/ERF domain
PRINTSPR003673.5E-589100IPR001471AP2/ERF domain
PRINTSPR003673.5E-5133153IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MAAASSSSSH DAGFSTASAM GGGGGGGVVG GEGASWEGGG GGGGGGGRGG ADRVSVAGLK  60
RARKERVCTA KERISRMPPC AAGKRSSIYR GVTRHRWTGR YEAHLWDKST WNQSQNKKGK  120
QGAYDDEEAA ARAYDLAALK YWGAGTLINF PVSDYVRDIE EMQMVSKEDY LVKSSAFSRG  180
FPKYRGLPRQ PQNSRRDASF GQLLGNDHNN LNCSTSKDVM TDGNYAGSFV LERKIDLTNY  240
IRWWLPKKAR QSESASASEE VANELRNLES SIPPTEPYKL PSLGPQNLKP RSGSLSACSI  300
LSQSDAYKNF MDKYSKLSEE KEGVSGKETD LGKTVPIQFA SSGFDGSVVS IGLAEFPAQK  360
SPYMLSPLLS APLRTSWNPV DPITDPLFWT GLVSPTGQSL TTLVMPLPAA SLSLIKQLH*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6650395e-61KM665039.1 Ananas bracteatus clone 50129 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020087422.10.0AP2-like ethylene-responsive transcription factor At2g41710 isoform X1
SwissprotQ8GWK21e-103AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A3Q0IG511e-175A0A3Q0IG51_PHODC; AP2-like ethylene-responsive transcription factor At2g41710
STRINGXP_008809562.11e-178(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92003136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.16e-92AP2 family protein