PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco002370.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

GRAS

Protein Properties

Length: 202aa MW: 22915.3 Da PI: 7.5053

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco002370.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	208.6	3.5e-64	1	195	172	374
GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269 l+vpf+f++l++ +l l+le+L++k+gEalaV + l+lh+ll++s sl+s +L +++l+Pkv+v++eqeadhn++++++rf+e+l++y+alfd Aco002370.1 1 LDVPFQFHPLLCPDLRRLDLESLKIKSGEALAVTSTLALHSLLSSSESLSS----FLYSLQRLRPKVLVLAEQEADHNGPTLVARFVESLNFYAALFD 94 68***************************************99999998....*************************************** PP GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367 +le+ +pr+s er+ vEr llg+ei+n++ c g +r+erhe++ +W +rl++aGF+p++ s a++ll+ + +g ++ +++++l+++W+drpL Aco002370.1 95 CLESAAPRHSPERAAVERLLLGEEIRNIIVCDGPDRTERHEKFDRWARRLHAAGFSPLAPS----FPARRLLHDFRCHGCKLRHDDACLFICWQDRPL 188 *****************************************************9877....5689************************* PP GRAS 368 vsvSaWr 374 +svSaW+ Aco002370.1 189 FSVSAWT 195 ****6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	1.2E-61	1	195	IPR005202	Transcription factor GRAS
PROSITE profile	PS50985	27.386	1	179	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
LDVPFQFHPL LCPDLRRLDL ESLKIKSGEA LAVTSTLALH SLLSSSESLS SFLYSLQRLR 60 PKVLVLAEQE ADHNGPTLVA RFVESLNFYA ALFDCLESAA PRHSPERAAV ERLLLGEEIR 120 NIIVCDGPDR TERHEKFDRW ARRLHAAGFS PLAPSFPARR LLHDFRCHGC KLRHDDACLF 180 ICWQDRPLFS VSAWTCRRLI D*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	4e-32	1	197	186	381	Protein SCARECROW
5b3h_A	3e-32	1	197	185	380	Protein SCARECROW
5b3h_D	3e-32	1	197	185	380	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020086271.1	1e-142	LOW QUALITY PROTEIN: scarecrow-like protein 3
Swissprot	Q9LPR8	7e-50	SCL3_ARATH; Scarecrow-like protein 3
TrEMBL	A0A199VXR5	1e-141	A0A199VXR5_ANACO; DELLA protein GAI1
STRING	Lus10022418	2e-67	(Linum usitatissimum)
STRING	GSMUA_Achr8P09690_001	2e-67	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP604	38	176

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50420.1	4e-50	scarecrow-like 3

Link Out ? help Back to Top
Phytozome	Aco002370.1

Publications ? help Back to Top
Gong X, et al. SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root. Plant Physiol., 2016. 170(3): p. 1675-83 [PMID:26818732] Lee SA, et al. Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue. Mol Plant, 2016. 9(6): p. 870-84 [PMID:26970019] Choi JW,Lim J Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation. Mol. Cells, 2016. 39(7): p. 524-9 [PMID:27306644]