PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco002371.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family GRAS
Protein Properties Length: 204aa    MW: 20907.6 Da    PI: 7.2153
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco002371.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS83.44e-26511771118
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaar.larsvselykalppsetseknsseelaal........klfsevsP 89 
                  l++lLl+cA+ v++g le+a+alL ++s la p+gdpmqRla+ f+ ALa+r l+rs ++l ++l+ps+ ++  ss++ ++         + f+ ++P
  Aco002371.1  51 LIHLLLNCAHEVAAGALERASALLDHVSALAHPSGDPMQRLATSFADALARRaLLRSFPGLLRSLSPSAPPPPASSSSSSSSwpsstpalRHFFRLCP 148
                  689***********************************************994566*********888877666444444444555554477****** PP

         GRAS  90 ilkfshltaNqaIleavegeervHiiDfd 118
                  +l ++  + N+a+  a+e+e+ vH++D+ 
  Aco002371.1 149 FLPLAAALSNHAVAAAMESERVVHVVDLR 177
                  ***************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098518.65525203IPR005202Transcription factor GRAS
PfamPF035141.4E-2351177IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MVQDDGSSSS SATSSSPLQS FSQMTLSPTA AGAGAGAWVG ELRSEERGLY LIHLLLNCAH  60
EVAAGALERA SALLDHVSAL AHPSGDPMQR LATSFADALA RRALLRSFPG LLRSLSPSAP  120
PPPASSSSSS SSWPSSTPAL RHFFRLCPFL PLAAALSNHA VAAAMESERV VHVVDLRAPS  180
DPAPAGDLLP SWRPGPAGPR TSG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020086271.12e-90LOW QUALITY PROTEIN: scarecrow-like protein 3
TrEMBLA0A199VXR58e-89A0A199VXR5_ANACO; DELLA protein GAI1
STRINGXP_008776639.16e-52(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.12e-23scarecrow-like 3