PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco002521.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

C2H2

Protein Properties

Length: 152aa MW: 15611.6 Da PI: 10.2336

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco002521.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	2.9e-05	16	38	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+ F ++ L H++ H Aco002521.1 16 FECSYCGRDFANSQALGGHQNAH 38 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.66E-7	13	43	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.3E-5	14	42	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	12.549	16	43	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	18	38	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence Send to blast
MGEAAATDHA AARRRFECSY CGRDFANSQA LGGHQNAHKK ERHRAAAAAA AHLRAAPPLR 60 RRAPLAAEPS SPAPERALWC GPGAAAAAGA PLHARALVPP PALAWSRVAL VPSWPPPFAV 120 DRTAGDSVEH GVDLHLTLAP SSTSSSFSSP P*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020086088.1	1e-100	zinc finger protein 6-like
TrEMBL	A0A1U8AK38	1e-18	A0A1U8AK38_NELNU; zinc finger protein 6-like
STRING	XP_010268055.1	2e-19	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12356	5	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10480.1	8e-09	zinc finger protein 5

Link Out ? help Back to Top
Phytozome	Aco002521.1