PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco002567.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

WRKY

Protein Properties

Length: 310aa MW: 32979.1 Da PI: 5.9927

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco002567.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	107.7	5.6e-34	170	227	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCtsa C vkk+vers++dp+vv++tYeg+H+h+ Aco002567.1 170 EDGYRWRKYGQKAVKNSPFPRSYYRCTSAACGVKKRVERSSDDPTVVVTTYEGRHTHP 227 8********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	9.1E-35	154	229	IPR003657	WRKY domain
SuperFamily	SSF118290	5.89E-29	162	229	IPR003657	WRKY domain
PROSITE profile	PS50811	32.282	164	229	IPR003657	WRKY domain
SMART	SM00774	6.2E-40	169	228	IPR003657	WRKY domain
Pfam	PF03106	4.6E-27	170	227	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MMTMGNREEE MEVAASILPF SDHLPSTLSG IFDSAADGGG AAAAMVGDRS SVGFLELLGL 60 QDLPRLLFDL PPPPPPPRCS AAASETSDAV NLPATPISSS ISSSSDEAIN DADGAKNAAI 120 APAKEESEEE AKSEKAGAAV GMGEKIRKGQ KRQREPRFAF KTQSEVDQLE DGYRWRKYGQ 180 KAVKNSPFPR SYYRCTSAAC GVKKRVERSS DDPTVVVTTY EGRHTHPSPV LPRGAHPALH 240 PTPLRGAAAE LGFAPPPALP LPLRPAYLNG YLRPPPLDFR HVSSAPTGAC DGLLEDVVAS 300 DVIRRIKEE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	6e-29	159	229	7	77	Probable WRKY transcription factor 4
2lex_A	6e-29	159	229	7	77	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM661563	0.0	KM661563.1 Ananas bracteatus clone 43994b microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020087645.1	0.0	probable WRKY transcription factor 48
Swissprot	O22900	3e-44	WRK23_ARATH; WRKY transcription factor 23
TrEMBL	A0A2H3X1C0	4e-74	A0A2H3X1C0_PHODC; probable WRKY transcription factor 48
STRING	XP_008776831.1	6e-75	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2125	37	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69310.2	2e-44	WRKY DNA-binding protein 57

Link Out ? help Back to Top
Phytozome	Aco002567.1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Guo D,Qin G EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses. Plant Signal Behav, 2016. 11(3): p. e1150404 [PMID:26914912] Prát T, et al. WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity. PLoS Genet., 2018. 14(1): p. e1007177 [PMID:29377885]