PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco002635.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C2H2
Protein Properties Length: 473aa    MW: 51407.9 Da    PI: 9.6194
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco002635.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.55.6e-0678100123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y+C++C++ F r  nL+ H r+H
  Aco002635.1  78 YVCEICNQGFQRDQNLQMHRRRH 100
                  9*********************9 PP
2zf-C2H216.13.1e-05163185123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C +C+k +  +s++k H++t+
  Aco002635.1 163 WVCAKCSKAYAVQSDYKAHLKTC 185
                  58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.9E-577100IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.99E-577100No hitNo description
PROSITE profilePS5015710.9778100IPR007087Zinc finger, C2H2
SMARTSM003550.005278100IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
SMARTSM00355210127157IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.99E-5158183No hitNo description
SMARTSM0035593163190IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009630Biological Processgravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MLSSPSPAPA PPPPPLPLLL SGGVGDASSA SPGPPQPFPS SHIAAATAKK KRRPAGTPDP  60
DAEVVSLSPR TLLESDRYVC EICNQGFQRD QNLQMHRRRH KVPWKLLKRE GGAGGEGAGA  120
EARKRVFVCP EPSCLHHDPC HALGDLVGIK KHFRRKHSTH RQWVCAKCSK AYAVQSDYKA  180
HLKTCGTRGH SCDCGRVFSR VESFIEHQDA CSAGRARARA ELQTPPPPPA CLSRTGSSPS  240
PSSDTNFSPT TTLATLIMPN RNAATMLRHA DQLFPSPRSH NLELQLLPPS TTQQYSVSST  300
LSSSLASVVA DEARDTTLRL SIGNFTGNSG PSDNIYPAVS AGVTTRKCAV SEEARERSRL  360
AAADEARREA KRQIELAERE FADAKRIRHQ AQTELDRARA IRDRAVQQIN SVLLQITCYA  420
CKKHFRAKPV AASDENSSLV ATSYVSSVVT QVEAENDDRR QNNNKTKIDP FQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-17161213557Zinc finger protein JACKDAW
5b3h_F5e-17161213557Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14852KKKRR
24853KKKRRP
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1067961e-107AK106796.1 Oryza sativa Japonica Group cDNA clone:002-116-B04, full insert sequence.
GenBankAK1195951e-107AK119595.1 Oryza sativa Japonica Group cDNA clone:002-117-D09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020089805.10.0protein indeterminate-domain 16-like
SwissprotF4IPE31e-138IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5
TrEMBLA0A199V8D40.0A0A199V8D4_ANACO; Protein SHOOT GRAVITROPISM 5
STRINGXP_008806637.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105138124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.11e-103C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kim JY,Ryu JY,Baek K,Park CM
    High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis.
    New Phytol., 2016. 209(1): p. 265-79
    [PMID:26256266]
  3. Ryu JY,Kim JY,Park CM
    Adaptive thermal control of stem gravitropism through alternative RNA splicing in Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1093715
    [PMID:26452406]
  4. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  5. Shi H, et al.
    Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17.
    J. Pineal Res., 2018. 65(2): p. e12494
    [PMID:29607541]