PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco002637.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

ZF-HD

Protein Properties

Length: 134aa MW: 13658 Da PI: 8.4996

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco002637.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	60.7	3.2e-19	7	54	3	53
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFH 53 k+ Y +C +NhAa+ G +DGC+E++++ ++ + C ACgCHR+FH Aco002637.1 7 KTIYLDCIRNHAATFGLVHYDGCCEYVED---RHQPGSSLCEACGCHRSFH 54 5689*********************98...4468999********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	8.0E-15	8	54	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	8.0E-9	10	54	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	17.138	10	57	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 134 aa Download sequence Send to blast
MDPPGYKTIY LDCIRNHAAT FGLVHYDGCC EYVEDRHQPG SSLCEACGCH RSFHLPMLIQ 60 TSGRSNNNNA AGGGGGNGGG SRKGGCAADG GRKSAAPGHR DGRKPPTIGG GGGKKGRAAG 120 RHGTAEESDQ NFS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020091291.1	2e-92	zinc-finger homeodomain protein 11-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9204	32	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42780.1	5e-11	homeobox protein 27

Link Out ? help Back to Top
Phytozome	Aco002637.1