PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco002750.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

ZF-HD

Protein Properties

Length: 227aa MW: 24298.9 Da PI: 7.845

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco002750.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	102.5	2.8e-32	74	126	5	58
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 rY+eClkNhA+ +GghavDGCgEfmp+ ge+gt ++l+CaACgCHRnFHR++++ Aco002750.1 74 RYRECLKNHAVGIGGHAVDGCGEFMPA-GEDGTLDGLRCAACGCHRNFHRKDPA 126 8***********************9.999******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	3.0E-21	73	124	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	4.5E-30	74	124	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	8.4E-29	74	124	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.928	75	124	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	1.3E-31	150	225	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.04E-19	150	224	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	2.9E-24	163	220	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MEFEEQEEEE GEEMGMGMEM ETPSAAAANS GRPGGGGGVA GVVGGWSGQQ QQRQQQRQQQ 60 RQQRKAAGGV GMGRYRECLK NHAVGIGGHA VDGCGEFMPA GEDGTLDGLR CAACGCHRNF 120 HRKDPAAHPG QLALPSSSGG HSRSREEGED GGGGGGGSTS GGRKRFRTKF TQEQKDKMLA 180 FAERVGWRIQ KHDEAAVQQF CDEACIHRHV LKVWMHNNKN TLGKKP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	2e-27	164	221	18	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein. Putative transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU972655	2e-68	EU972655.1 Zea mays clone 385315 ZF-HD protein dimerisation region containing protein mRNA, complete cds.
GenBank	EU974775	2e-68	EU974775.1 Zea mays clone 457946 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020090870.1	1e-164	zinc-finger homeodomain protein 2
Swissprot	Q9SB61	2e-68	ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBL	A0A200PUE8	4e-79	A0A200PUE8_9MAGN; ZF-HD homeobox protein
STRING	evm.model.supercontig_55.54	4e-77	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3950	32	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	6e-64	homeobox protein 22

Link Out ? help Back to Top
Phytozome	Aco002750.1

Publications ? help Back to Top
Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]