PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco003073.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family NF-YB
Protein Properties Length: 126aa    MW: 14165.4 Da    PI: 6.5144
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco003073.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB34.16.6e-1183122149
        NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtse 49 
                  vreqd+f+ ianv+rim++vlPa+ak         +ecvs++isf++++
  Aco003073.1  83 VREQDEFIMIANVIRIMQRVLPAHAK---------HECVSKYISFIAGQ 122
                  69**********************98.........8**********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.5E-582121IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MVMVVVLSER ALNEANYIVL LPWNETTRGI SNAYVQRHER EEIEKNPVTI VPYAKLIVPS  60
LPAKTDLIQQ SADDHPAPAV TAVREQDEFI MIANVIRIMQ RVLPAHAKHE CVSKYISFIA  120
GQFKE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.22e-14nuclear factor Y, subunit B6