PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco003120.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family WRKY
Protein Properties Length: 694aa    MW: 75113 Da    PI: 5.641
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco003120.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.72e-32294351260
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                  +DgynWrKYGqK+vk sefprsYY+Ct+++Cpvkkkvers+ +++++ei+Y+g+Hnh+k
  Aco003120.1 294 EDGYNWRKYGQKQVKHSEFPRSYYKCTHPNCPVKKKVERSH-EGHITEIIYKGNHNHPK 351
                  8****************************************.***************85 PP
2WRKY104.84.7e-33498556159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++d k v++tYeg+Hnhe
  Aco003120.1 498 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCSVRKHVERASHDLKSVITTYEGKHNHE 556
                  59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.286288352IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-28291352IPR003657WRKY domain
SuperFamilySSF1182902.35E-25292352IPR003657WRKY domain
SMARTSM007746.8E-36293351IPR003657WRKY domain
PfamPF031068.2E-25294350IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.1E-37483558IPR003657WRKY domain
SuperFamilySSF1182907.32E-29490558IPR003657WRKY domain
PROSITE profilePS5081137.539493558IPR003657WRKY domain
SMARTSM007744.0E-38498557IPR003657WRKY domain
PfamPF031062.8E-25499556IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MSEEDDGIAM ISEWAPPDPE QRALMSEYVA RPISSLVVEK GSDGPADGSE NQNAVARSTE  60
EEDVFGHKSN NHGRLAERMA ARAGFNVPKL NMSHIPLNNI VASSLEAQSP YLTIPPGLSP  120
TTLLDSPVFL SNALGQPSPT TGRFSFLESG NADQMMVCIP NKIQDCSVED ETETFSFKPH  180
LEPQSSYFLS AENKGSSTIN HMQPLPSMAV SVQAENTVRA GQEGSPFNNT NQRKFNLQID  240
SSDQKDISSS NILKQSMPDS FLANDQSSPP DDHQDGEADP KGEQASAAIG APAEDGYNWR  300
KYGQKQVKHS EFPRSYYKCT HPNCPVKKKV ERSHEGHITE IIYKGNHNHP KPPVNRRPGV  360
PSSHPFTESQ VDGTEKSLWA NTEHGAPQDW VSDAVDANSS ASVAAKLCDP AAAVQSQDGG  420
ARFESADAID VSSTLSNEEE EDDRATHGSV SLACDGEGDE TESKRRKLDA CAIEMSAASR  480
AVREPRVVVQ TTSEVDILDD GYRWRKYGQK VVKGNPNPRS YYKCTHPGCS VRKHVERASH  540
DLKSVITTYE GKHNHEVPAA RNSSHPSSTS GASAMGASQS NSMQRRPDLT QDGLVRFTSV  600
APLGPLGLPP RDHLGPPSCF SFGMGQPRLT NLPMPNFVPI GLSPPMHAYI GHGHGIDPGL  660
MLPKGEPQEE PVSNGGSSVY QQMINRLPLG PQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-37294559878Probable WRKY transcription factor 4
2lex_A8e-37294559878Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6667491e-107KM666749.1 Ananas bracteatus clone 52123a microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020090449.10.0probable WRKY transcription factor 34
RefseqXP_020090451.10.0probable WRKY transcription factor 34
TrEMBLA0A199UMA00.0A0A199UMA0_ANACO; Putative WRKY transcription factor 2
STRINGXP_008806182.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-162WRKY DNA-binding protein 2