PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco003233.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C2H2
Protein Properties Length: 477aa    MW: 53296.8 Da    PI: 6.1229
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco003233.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.18.2e-07250271223
                  EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                   C++Cgk F+r  nL+ H+r H
  Aco003233.1 250 FCSICGKGFKRDANLRMHMRGH 271
                  6*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.55E-5247274No hitNo description
SMARTSM003550.0023249271IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.092249276IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.5E-6250300IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280251271IPR007087Zinc finger, C2H2
SMARTSM00355110298331IPR015880Zinc finger, C2H2-like
SMARTSM0035522336358IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MDPTNRRPVY ENSSNMVDPS GNFNPNQLYS QFDSGNLCFD SRMKQPLLEF PASFDNPTIQ  60
RIESAPFVNN QAMNWDPRAM LTNLSFLEQK IHQLQDLIRS IITDEAQFSV QPNELAAQQQ  120
LVTADLTCII IQLISTAGTL LPSVKNTIVA NSPPIQQLAS IIGSTSSSGS NGASHQNKDF  180
SSEGQTNKEY EDMLRDLSEN GIEGIDPIQV EDQEVKDSED GGADGENLPP GSYEVLQLEK  240
EEILAPHTHF CSICGKGFKR DANLRMHMRG HGDEYKTPAA LAKPTKEASS EPVLVKRYSC  300
PFIGCKRNKE HKKFHPLKTI LCVKNHYKRT HCDKRYTCSR CNTKKFSVIA DLKTHEKHCG  360
RDKWLCSCGT TFSRKDKLFG HVALFQGHTP ALPSEETKVK EINKVEGVST KSVEHQDVLD  420
IKALDNDREY FSPMNFDSFN FGGLDEFPRT AFDPSESSFL FLPPGSCGFD QKNGEN*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020107151.10.0zinc finger protein STOP1 homolog
RefseqXP_020107152.10.0zinc finger protein STOP1 homolog
SwissprotQ943I61e-180STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLA0A2H3YA460.0A0A2H3YA46_PHODC; zinc finger protein STOP1 homolog isoform X1
STRINGXP_008795575.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151238111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.21e-168C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]