PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco003302.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family NAC
Protein Properties Length: 201aa    MW: 22617.3 Da    PI: 5.0425
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco003302.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM120.61.4e-3781251128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                  lppGfrF P+deelvv++L +k+++ +++  ++i+++d+   +PwdL+ k+ ++ ++wyfF++r         +nrat +gyW+   +d++++s  ++
  Aco003302.1   8 LPPGFRFFPSDEELVVHFLYRKAAHLPCQP-DIIPTIDLRCNDPWDLNGKALQGGNQWYFFTRR--------TPNRATPNGYWSPIDTDEPITS-CER 95 
                  79*************************999.99**************977778899*****997........579*******************.999 PP

          NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                  +vg+kktL+fy g++p+g+kt W+mhey+l
  Aco003302.1  96 VVGVKKTLIFYYGETPQGTKTYWIMHEYHL 125
                  *****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-495166IPR003441NAC domain
PROSITE profilePS5100544.6778167IPR003441NAC domain
PfamPF023659.8E-249125IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MGGATINLPP GFRFFPSDEE LVVHFLYRKA AHLPCQPDII PTIDLRCNDP WDLNGKALQG  60
GNQWYFFTRR TPNRATPNGY WSPIDTDEPI TSCERVVGVK KTLIFYYGET PQGTKTYWIM  120
HEYHLAEAGL SNTRSTTSCT NASRPVKKRG NQTTESNKWV LCRVYESNCG SQVSFCDDGS  180
ELSCLDEVFL SLDDLDEVTN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-42617215170NO APICAL MERISTEM PROTEIN
1ut4_B3e-42617215170NO APICAL MERISTEM PROTEIN
1ut7_A3e-42617215170NO APICAL MERISTEM PROTEIN
1ut7_B3e-42617215170NO APICAL MERISTEM PROTEIN
3swm_A3e-42617218173NAC domain-containing protein 19
3swm_B3e-42617218173NAC domain-containing protein 19
3swm_C3e-42617218173NAC domain-containing protein 19
3swm_D3e-42617218173NAC domain-containing protein 19
3swp_A3e-42617218173NAC domain-containing protein 19
3swp_B3e-42617218173NAC domain-containing protein 19
3swp_C3e-42617218173NAC domain-containing protein 19
3swp_D3e-42617218173NAC domain-containing protein 19
4dul_A3e-42617215170NAC domain-containing protein 19
4dul_B3e-42617215170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020107570.11e-150NAC domain-containing protein 104-like
SwissprotQ8GWK62e-66NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A199ULB41e-125A0A199ULB4_ANACO; NAC domain-containing protein 68
STRINGGSMUA_Achr10P10790_0011e-87(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36673679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.19e-69xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]