PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco003359.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family Whirly
Protein Properties Length: 231aa    MW: 25702.4 Da    PI: 10.3055
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco003359.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly158.12.6e-49581892139
       Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePl 99 
                  v+k+kaal++ + +p+f +l+sg+ k++++G +ll++ +a+++rkydW+kkq fals+te+++l++l++ e cef+hdp++k+s eG+v+k+l++ Pl
  Aco003359.1  58 VFKGKAALSMSPLLPKFRKLESGASKVEKNGVVLLTFWPAIGQRKYDWQKKQIFALSPTELGSLISLGPAEHCEFLHDPSMKSSLEGQVKKSLSITPL 155
                  9************************************************************************************************* PP

       Whirly 100 pdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                   + s       v n++ k+ne+fsvPv++aef+v+r++++
  Aco003359.1 156 GNDSA------VVNTVEKTNERFSVPVTRAEFTVMRTAFS 189
                  99885......56777899******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.109.6E-6746207IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544471.41E-6149229IPR009044ssDNA-binding transcriptional regulator
PfamPF085363.0E-5058186IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MTKLARFLPS RNLLLRCSFN IKDAFWINSF SSHRGISSSA ADYVTDGSSG RSYANYTVFK  60
GKAALSMSPL LPKFRKLESG ASKVEKNGVV LLTFWPAIGQ RKYDWQKKQI FALSPTELGS  120
LISLGPAEHC EFLHDPSMKS SLEGQVKKSL SITPLGNDSA VVNTVEKTNE RFSVPVTRAE  180
FTVMRTAFSY VLPHLMGWDQ AVRPRQANTP ASPLKQQVEE RPNPDFEWGR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3n1h_A1e-65502009165StWhy2
3n1i_A1e-65502009165protein StWhy2
3n1j_A1e-65502009165Protein StWhy2
3n1k_A1e-65502009165protein StWhy2
3n1l_A1e-65502009165protein StWhy2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020107565.11e-168single-stranded DNA-bindig protein WHY2, mitochondrial isoform X1
SwissprotD9J0342e-70WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A199V4581e-167A0A199V458_ANACO; Single-stranded DNA-bindig protein WHY2, mitochondrial
STRINGXP_008795279.11e-112(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30123885
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.11e-67WHIRLY 2